RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SPATA6Q9NWH7 488 aaPredicted RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 KLHL42Q9P2K6 505 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 XPR1Q9UBH6 696 aa16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 CNOT6Q9ULM6 557 aaKnown RBP16.88■□□□□ 0.29
CCDC28B-202ENST00000421922 PROCP04070 461 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 MYL2P10916 166 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 TFEBP19484 476 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 PBLDP30039 288 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 IGFALSP35858 605 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 NUDT1P36639 197 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 PRLHRP49683 370 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 CCR5P51681 352 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 WDR4P57081 412 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 TIAL1Q01085 375 aaKnown RBP eCLIP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 KHDC1Q4VXA5 237 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 TMEM220Q6QAJ8 160 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 ADGRG6Q86SQ4 1221 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 NUDCD3Q8IVD9 361 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 LKAAEAR1Q8TD35 194 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 COX14Q96I36 57 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 UBXN10Q96LJ8 280 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 GPR174Q9BXC1 333 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 TEX101Q9BY14 249 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 TSR3Q9UJK0 312 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 MED16Q9Y2X0 877 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 OR1A2Q9Y585 309 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 PABPN1LA6NDY0 278 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 CBSLP0DN79 551 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 MYCLP1P12525 358 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 CPA3P15088 417 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 CBSP35520 551 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 PXNP49023 591 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 ASPHQ12797 758 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 DLG1Q12959 904 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 BCL7AQ4VC05 210 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 TMEM207Q6UWW9 146 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 FSTL5Q8N475 847 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 GIMAP7Q8NHV1 300 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 SKA2Q8WVK7 121 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 ANKRD49Q8WVL7 239 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 MAGEB18Q96M61 343 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 CCM2Q9BSQ5 444 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 C6orf106Q9H6K1 298 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 WSB2Q9NYS7 404 aaPredicted RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 CPSF2Q9P2I0 782 aaKnown RBP16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 ATXN10Q9UBB4 475 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 GALPQ9UBC7 116 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 FAM8A1Q9UBU6 413 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 EMCNQ9ULC0 261 aa16.87■□□□□ 0.29
CCDC28B-202ENST00000421922 IGHV1OR15-9A0A0B4J2B8 117 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 GPR89AB7ZAQ6 455 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 TK2O00142 265 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 BTN3A1O00481 513 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 AXIN1O15169 862 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 RAD51BO15315 384 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 BIRC5O15392 142 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 SMIM24O75264 130 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 WISP3O95389 354 aaPredicted RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 GSTM1P09488 218 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 GPR89BP0CG08 455 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 ENO3P13929 434 aaPredicted RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 CD1DP15813 335 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 KELP23276 732 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 ETV4P43268 484 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 CTSCP53634 463 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 GSTM4Q03013 218 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 HSPA14Q0VDF9 509 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 USP39Q53GS9 565 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 PLEKHS1Q5SXH7 462 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 CWF19L1Q69YN2 538 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 CRTC3Q6UUV7 619 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 FRA10AC1Q70Z53 315 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 ALYREFQ86V81 257 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 BEND7Q8N7W2 519 aaPredicted RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 EEF1AKMT1Q8WVE0 214 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 ASZ1Q8WWH4 475 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 CKAP2Q8WWK9 683 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 RLN3Q8WXF3 142 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 FOXJ1Q92949 421 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 EXT2Q93063 718 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 TMEM159Q96B96 161 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 SLC30A3Q99726 388 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 APOOQ9BUR5 198 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 TFB2MQ9H5Q4 396 aaKnown RBP16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 ALG9Q9H6U8 611 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 LATS2Q9NRM7 1088 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 COPG2Q9UBF2 871 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 MOSPD1Q9UJG1 213 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 RNF112Q9ULX5 631 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 DMTF1Q9Y222 760 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 TMEM98Q9Y2Y6 226 aa16.86■□□□□ 0.29
CCDC28B-202ENST00000421922 CCDC189A1A4V9 331 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 SYCE1LA8MT33 242 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 EIF3FO00303 357 aaPredicted RBP16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 ZBTB14O43829 449 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 BPGMP07738 259 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 DHRS4L1P0CG22 281 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 ZNF8P17098 575 aaPredicted RBP16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 AOAHP28039 575 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 HTR1BP28222 390 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms