RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PGGT1BP53609 377 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 TAF1BQ53T94 588 aaPredicted RBP17.79■□□□□ 0.44
SDC1-203ENST00000403076 HSP90B2PQ58FF3 399 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 TIFABQ6ZNK6 161 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 OTOAQ7RTW8 1153 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 PIM3Q86V86 326 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 HID1Q8IV36 788 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 CEP97Q8IW35 865 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 SRRM1Q8IYB3 904 aaKnown RBP17.79■□□□□ 0.44
SDC1-203ENST00000403076 SIDT2Q8NBJ9 832 aaKnown RBP17.79■□□□□ 0.44
SDC1-203ENST00000403076 C1orf216Q8TAB5 229 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 LKAAEAR1Q8TD35 194 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 MZB1Q8WU39 189 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 OR1E3Q8WZA6 343 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 ELMO1Q92556 727 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 TSACCQ96A04 125 aaPredicted RBP17.79■□□□□ 0.44
SDC1-203ENST00000403076 VPS11Q9H270 941 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 GPAMQ9HCL2 828 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 GALPQ9UBC7 116 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 SUFUQ9UMX1 484 aa17.79■□□□□ 0.44
SDC1-203ENST00000403076 NOVA2Q9UNW9 492 aaKnown RBP17.79■□□□□ 0.44
SDC1-203ENST00000403076 SPTY2D1-AS1A0A0U1RR47 76 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 A0A1B0GTW7 788 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 GOLGA8RI6L899 631 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 KPNA5O15131 536 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 KMOO15229 486 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 LILRB5O75023 590 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 MPOP05164 745 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 SRP54P61011 504 aaKnown RBP17.78■□□□□ 0.44
SDC1-203ENST00000403076 BOP1Q14137 746 aaKnown RBP17.78■□□□□ 0.44
SDC1-203ENST00000403076 ZNF460Q14592 562 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 LPAL2Q16609 132 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 INSCQ1MX18 579 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 PLA2G4EQ3MJ16 856 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 AGBL2Q5U5Z8 902 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 ZC3H14Q6PJT7 736 aaKnown RBP17.78■□□□□ 0.44
SDC1-203ENST00000403076 CHST15Q7LFX5 561 aaPredicted RBP17.78■□□□□ 0.44
SDC1-203ENST00000403076 TRABD2AQ86V40 505 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 SLC22A18ASQ8N1D0 253 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 ZBTB2Q8N680 514 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 INPP5DQ92835 1189 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 ARL8AQ96BM9 186 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 SH3GL2Q99962 352 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 DHRS7Q9Y394 339 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 DNMT3AQ9Y6K1 912 aaPredicted RBP17.78■□□□□ 0.44
SDC1-203ENST00000403076 R4GN57 208 aa17.78■□□□□ 0.44
SDC1-203ENST00000403076 A0A096LPK6 155 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 SCAMP1O15126 338 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 RFPL1O75677 317 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 TNFP01375 233 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 FUCA1P04066 466 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 C2P06681 752 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 PYGBP11216 843 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 CD9P21926 228 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 PPARDQ03181 441 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 FZD2Q14332 565 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 TTLL9Q3SXZ7 439 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 SYTL3Q4VX76 610 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 KCTD16Q68DU8 428 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 NAPRTQ6XQN6 538 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 SYT12Q8IV01 421 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 ZNF547Q8IVP9 402 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 PDXPQ96GD0 296 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 SYTL2Q9HCH5 934 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 PCMTD2Q9NV79 361 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 SENP1Q9P0U3 644 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 RAB23Q9ULC3 237 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 MED16Q9Y2X0 877 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 ACOT9Q9Y305 439 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 PIKFYVEQ9Y2I7 2098 aa17.77■□□□□ 0.44
SDC1-203ENST00000403076 VILLO15195 856 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 RASGRP1O95267 797 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 APOA4P06727 396 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 VCLP18206 1134 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 CCR7P32248 378 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 DPP6P42658 865 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 CLCN7P51798 805 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 TIAL1Q01085 375 aaKnown RBP eCLIP17.77■□□□□ 0.432e-7■■■■■ 33.2
SDC1-203ENST00000403076 HSPA14Q0VDF9 509 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 ZKSCAN8Q15776 578 aaPredicted RBP17.77■□□□□ 0.43
SDC1-203ENST00000403076 ALG11Q2TAA5 492 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 PYCR3Q53H96 274 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 ZNF542PQ5EBM4 170 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 PPM1JQ5JR12 505 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 PAQR3Q6TCH7 311 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 TBC1D1Q86TI0 1168 aaPredicted RBP17.77■□□□□ 0.43
SDC1-203ENST00000403076 AMZ2Q86W34 360 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 PARGQ86W56 976 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 C4orf33Q8N1A6 199 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 CD200R1Q8TD46 325 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 ACMSDQ8TDX5 336 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 ISL2Q96A47 359 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 SCARF2Q96GP6 870 aaPredicted RBP17.77■□□□□ 0.43
SDC1-203ENST00000403076 CABS1Q96KC9 395 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 ATP6V1G3Q96LB4 118 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 TSNARE1Q96NA8 513 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 OR2M4Q96R27 311 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 SMC6Q96SB8 1091 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 POPDC3Q9HBV1 291 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 GPR27Q9NS67 375 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms