RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SUDS3Q9H7L9 328 aaPredicted RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 SYNDIG1Q9H7V2 258 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 MBNL1Q9NR56 388 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 APPL1Q9UKG1 709 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 TMPRSS11EQ9UL52 423 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 CNOT6Q9ULM6 557 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 PCDHB1Q9Y5F3 818 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 IGLV3-16A0A075B6K0 115 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 FAM221BA6H8Z2 402 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 FADS2P1A8MWK0 482 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 K7ESM1 405 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 STX7O15400 261 aaKnown RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 TLX3O43711 291 aaPredicted RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 LZTS3O60299 673 aaPredicted RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 BANF1O75531 89 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 PIAS2O75928 621 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 DKK1O94907 266 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 POLBP06746 335 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 TUBBP07437 444 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 GSTA2P09210 222 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 GIMD1P0DJR0 217 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 AKT2P31751 481 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 FOXN2P32314 431 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 TERF1P54274 439 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 YPEL5P62699 121 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 OVGP1Q12889 678 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 PDIA2Q13087 525 aaKnown RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 SGCGQ13326 291 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 NFATC2Q13469 925 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 FZD2Q14332 565 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 CRYMQ14894 314 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 ERCC6LQ2NKX8 1250 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 INAVAQ3KP66 663 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 SPANXN3Q5MJ09 141 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 RD3Q7Z3Z2 195 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 SNX20Q7Z614 316 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 SFTPA2Q8IWL1 248 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 CNTN4Q8IWV2 1026 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 PAF1Q8N7H5 531 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 PLA2G15Q8NCC3 412 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 GPR150Q8NGU9 434 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 UBXN4Q92575 508 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 GTPBP3Q969Y2 492 aaKnown RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 AP2M1Q96CW1 435 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 FCRL3Q96P31 734 aaPredicted RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 MOCS1Q9NZB8 636 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 SAMD15Q9P1V8 674 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 SIRPGQ9P1W8 387 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 MTRF1LQ9UGC7 380 aaKnown RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 SLC2A6Q9UGQ3 507 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 NFU1Q9UMS0 254 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 AK5Q9Y6K8 562 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 FAM169AQ9Y6X4 670 aa9.09□□□□□ -0.95
VPS53-203ENST00000401468 USP9XQ93008 2570 aaPredicted RBP9.09□□□□□ -0.95
VPS53-203ENST00000401468 LY6G6EA0A0G2JKS1 128 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 GLYATL1P3A0A0U1RQE8 302 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 CCDC162PA2VCL2 907 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 CPED1A4D0V7 1026 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 TMEM8BA6NDV4 472 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 A6NNZ2 444 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 BUD23O43709 281 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 SRP72O76094 671 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 PAMP19021 973 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 EIF2S3P41091 472 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 RABIFP47224 123 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 KIAA1024LP59773 190 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 VSNL1P62760 191 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 EIF2B5Q13144 721 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 ITGA9Q13797 1035 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 SEPT6Q14141 434 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 SMAD1Q15797 465 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 BBS9Q3SYG4 887 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 GPR33Q49SQ1 333 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 ATP13A5Q4VNC0 1218 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 DENND2CQ68D51 928 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 AFTPHQ6ULP2 937 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 UNC5AQ6ZN44 842 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 GALNT7Q86SF2 657 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 DCP2Q8IU60 420 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 LMNTD2Q8IXW0 634 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 FBXO36Q8NEA4 188 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 DDHD1Q8NEL9 900 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 LMX1AQ8TE12 382 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 BTN2A2Q8WVV5 523 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 HDAC10Q969S8 669 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 SCARF2Q96GP6 870 aaPredicted RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 APOLD1Q96LR9 279 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 TBATAQ96M53 351 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 AGAP2Q99490 1192 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 TRIM56Q9BRZ2 755 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 RIOK2Q9BVS4 552 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 LRRC4CQ9HCJ2 640 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 PRM3Q9NNZ6 103 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 BPIFA1Q9NP55 256 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 TIMMDC1Q9NPL8 285 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 ZC3H7BQ9UGR2 993 aaKnown RBP9.08□□□□□ -0.96
VPS53-203ENST00000401468 RPS6KL1Q9Y6S9 549 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 U3KQA8 63 aa9.08□□□□□ -0.96
VPS53-203ENST00000401468 SDK2Q58EX2 2172 aa9.07□□□□□ -0.96
VPS53-203ENST00000401468 GPR89AB7ZAQ6 455 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms