RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 SMARCD2Q92925 531 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ASB9Q96DX5 294 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 APOL4Q9BPW4 351 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 IMPAD1Q9NX62 359 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 MTMR10Q9NXD2 777 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 SNRNP200O75643 2136 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 PKDREJQ9NTG1 2253 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 OTOGLQ3ZCN5 2332 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 EPHX1P07099 455 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 PRR5P85299 388 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 RPA4Q13156 261 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CLLU1OSQ5K130 101 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 GALNT13Q8IUC8 556 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 PDLIM5Q96HC4 596 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 DNAJC1Q96KC8 554 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 EXOC2Q96KP1 924 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 EXD2Q9NVH0 621 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 DNAJC11Q9NVH1 559 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 TK2O00142 265 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 KIF1CO43896 1103 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 TBX18O95935 607 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 PRPS1L1P21108 318 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 LAMA2P24043 3122 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 GPC1P35052 558 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 DCDC1P59894 354 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 C1DQ13901 141 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 SMU1Q2TAY7 513 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 HABP4Q5JVS0 413 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 SWT1Q5T5J6 900 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 MBLAC2Q68D91 279 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 RNF19BQ6ZMZ0 732 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 HFE2Q6ZVN8 426 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 TRIM69Q86WT6 500 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 C10orf107Q8IVU9 208 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 OR7D4Q8NG98 312 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 MIPOL1Q8TD10 442 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 WDR60Q8WVS4 1066 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CXorf40BQ96DE9 158 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 MRPL48Q96GC5 212 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 NR1H4Q96RI1 486 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 MAN1C1Q9NR34 630 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 SEMA3GQ9NS98 782 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ZIM2Q9NZV7 527 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 DKK3Q9UBP4 350 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 TMCC3Q9ULS5 477 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 BEST1O76090 585 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CFHP08603 1231 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 C7P10643 843 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 RRM2P31350 389 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 KCNQ1P51787 676 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ACTR3P61158 418 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 RPS21P63220 83 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CSNK2BP67870 215 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CLCQ05315 142 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ZSWIM7Q19AV6 140 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 VPS26BQ4G0F5 336 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 TXNDC8Q6A555 127 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ALG1LQ6GMV1 187 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 C22orf39Q6P5X5 142 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 SERPINA9Q86WD7 417 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CPSF7Q8N684 471 aaKnown RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ZNF513Q8N8E2 541 aaPredicted RBP3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ZBTB9Q96C00 473 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 FAM84AQ96KN4 292 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ZNF382Q96SR6 550 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 CYP4F12Q9HCS2 524 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 ZNF232Q9UNY5 417 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 DHRS7Q9Y394 339 aa3.35□□□□□ -1.87
VPS13C-203ENST00000395896 SAC3D1A6NKF1 404 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 MAN2B1O00754 1011 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 OR4Q2P0C623 313 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 PSMA3P25788 255 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 WDR4P57081 412 aaKnown RBP3.34□□□□□ -1.87
VPS13C-203ENST00000395896 NFKB2Q00653 900 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 ITPRIPL2Q3MIP1 535 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 GALNTL6Q49A17 601 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 ZNF549Q6P9A3 640 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 LRRTM4Q86VH4 590 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 CDC26Q8NHZ8 85 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 ZSCAN18Q8TBC5 510 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-203ENST00000395896 KLHL5Q96PQ7 755 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 CCDC3Q9BQI4 270 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 SLC29A3Q9BZD2 475 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 NMUR2Q9GZQ4 415 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 OSGEPL1Q9H4B0 414 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 LRTM1Q9HBL6 345 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 FBXO6Q9NRD1 293 aaPredicted RBP3.34□□□□□ -1.87
VPS13C-203ENST00000395896 ADPRHL2Q9NX46 363 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 MS4A12Q9NXJ0 267 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 MAGEA13PA6NCF6 341 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 DRD1P21728 446 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 CRADDP78560 199 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 AP5B1Q2VPB7 878 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 MYLK3Q32MK0 819 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 LONP2Q86WA8 852 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 TEX26Q8N6G2 289 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 KLHL23Q8NBE8 558 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 ZNF607Q96SK3 696 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 DPEP2Q9H4A9 486 aa3.34□□□□□ -1.87
VPS13C-203ENST00000395896 POMKQ9H5K3 350 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms