RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PTPN5P54829 565 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 FOXM1Q08050 763 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 GRB7Q14451 532 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 RPS6KA2Q15349 733 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 TGFBIQ15582 683 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 XKR7Q5GH72 579 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 GPRIN3Q6ZVF9 776 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 RTL10Q7L3V2 364 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 SYVN1Q86TM6 617 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 HLA-CQ95604 372 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 S1PR5Q9H228 398 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 PRDM6Q9NQX0 595 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 RIC8BQ9NVN3 520 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 GID8Q9NWU2 228 aa21.27■□□□□ 0.99
TRIM54-202ENST00000380075 EVLQ9UI08 416 aaPredicted RBP21.27■□□□□ 0.99
TRIM54-202ENST00000380075 OBSL1O75147 1896 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 TRAV19A0A0A6YYK7 116 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 EIF4E1BA6NMX2 242 aaKnown RBP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 K7ERQ8 282 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 E2F3O00716 465 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 SCAMP3O14828 347 aaKnown RBP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 ANGPT2O15123 496 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 HNRNPA1P09651 372 aaKnown RBP eCLIP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 PIM1P11309 404 aaPredicted RBP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 HOXA9P31269 272 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 RGS4P49798 205 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 HK3P52790 923 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 RHDQ02161 417 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 PTPRRQ15256 657 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 PCBP2Q15366 365 aaKnown RBP eCLIP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 RBBP7Q16576 425 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 MAP7D1Q3KQU3 841 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 PTRHD1Q6GMV3 140 aaKnown RBP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 GAREM2Q75VX8 874 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 HOMEZQ8IX15 550 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 CBARPQ8N350 705 aaPredicted RBP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 SPDL1Q96EA4 605 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 GCNAQ96QF7 691 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 GPATCH1Q9BRR8 931 aaKnown RBP21.26■□□□□ 0.99
TRIM54-202ENST00000380075 Q9H521 79 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 CFAP97Q9P2B7 532 aa21.26■□□□□ 0.99
TRIM54-202ENST00000380075 TRBV5-4A0A0C4DH59 114 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 C1orf232A0A0U1RR37 186 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 CAPN8A6NHC0 703 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 NCF1BA6NI72 391 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 NCF1CA8MVU1 366 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 NR5A2O00482 541 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 PRAMEF12O95522 483 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 ALPIP09923 528 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 NCF1P14598 390 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 VCLP18206 1134 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 TCN1P20061 433 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 MSX2P35548 267 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 AGTR2P50052 363 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 CYP4F8P98187 520 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 LMAN2Q12907 356 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 GPR33Q49SQ1 333 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 FRA10AC1Q70Z53 315 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 SERPINA9Q86WD7 417 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 TMC8Q8IU68 726 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 MINDY1Q8N5J2 469 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 KLHL32Q96NJ5 620 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 LRRC3Q9BY71 257 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 SARS2Q9NP81 518 aaKnown RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 BTRCQ9Y297 605 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 GPR45Q9Y5Y3 372 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 PTGDR2Q9Y5Y4 395 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 UNC80Q8N2C7 3258 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 PRORSD1PA6NEY8 169 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 SMAD6O43541 496 aaKnown RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 S100BP04271 92 aaPredicted RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 CYBBP04839 570 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 SERPINA4P29622 427 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 HSPA13P48723 471 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 NFATC2Q13469 925 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 CRY1Q16526 586 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 PLEKHG6Q3KR16 790 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 OR52E8Q6IFG1 317 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 BBS7Q8IWZ6 715 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 ELMOD1Q8N336 334 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 DCUN1D1Q96GG9 259 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 LYSMD1Q96S90 227 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 AIG1Q9NVV5 245 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 HCFC1R1Q9NWW0 138 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 ABCD2Q9UBJ2 740 aa21.25■□□□□ 0.99
TRIM54-202ENST00000380075 CNOT11Q9UKZ1 510 aaKnown RBP21.25■□□□□ 0.99
TRIM54-202ENST00000380075 BRWD1Q9NSI6 2320 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 GAPDHSO14556 408 aaPredicted RBP21.24■□□□□ 0.99
TRIM54-202ENST00000380075 RAD51BO15315 384 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 PAPLNO95428 1278 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 LINGO3P0C6S8 592 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 CDKN3Q16667 212 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 GRAMD4Q6IC98 578 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 FAM151BQ6UXP7 276 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 TICAM1Q8IUC6 712 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 SMG7Q92540 1137 aaKnown RBP21.24■□□□□ 0.99
TRIM54-202ENST00000380075 ASB8Q9H765 288 aa21.24■□□□□ 0.99
TRIM54-202ENST00000380075 COPS7BQ9H9Q2 264 aaPredicted RBP21.24■□□□□ 0.99
TRIM54-202ENST00000380075 MTCL1Q9Y4B5 1905 aaKnown RBP21.23■□□□□ 0.99
TRIM54-202ENST00000380075 TCRBV3S1A0A5B6 114 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms