RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 KCTD5Q9NXV2 234 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 RAPGEFL1Q9UHV5 662 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 MRTO4Q9UKD2 239 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 TELO2Q9Y4R8 837 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 CAMSAP1Q5T5Y3 1602 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 RGS10O43665 173 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 OR4F21O95013 312 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 GOT2P00505 430 aaKnown RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 FAUP35544 74 aaKnown RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 SPAM1P38567 509 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ILF2Q12905 390 aaKnown RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ZFP69Q49AA0 526 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 LRRC38Q5VT99 294 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 TRPV1Q8NER1 839 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 OR10A6Q8NH74 314 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ACMSDQ8TDX5 336 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 TNFAIP8L1Q8WVP5 186 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 KREMEN1Q96MU8 473 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 PHPT1Q9NRX4 125 aaPredicted RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 RIIAD1A6NNX1 92 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 CDC40O60508 579 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 CD247P20963 164 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 TTKP33981 857 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 FLT3LGP49771 235 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ANKRD22Q5VYY1 191 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 LINGO2Q7L985 606 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 IQCHQ86VS3 1027 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 RBM15BQ8NDT2 890 aaKnown RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 DEC1Q9P2X7 70 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 DMTF1Q9Y222 760 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 RWDD3Q9Y3V2 267 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 E9PCH4 1651 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 MAP2K7O14733 419 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 GRM5P41594 1212 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 GMFBP60983 142 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 TOR1AIP1Q5JTV8 583 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 IDNKQ5T6J7 187 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 SPATA19Q7Z5L4 167 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 CERS5Q8N5B7 392 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 SIPA1Q96FS4 1042 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 CDK15Q96Q40 435 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 RHOJQ9H4E5 214 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 GPN1Q9HCN4 374 aaPredicted RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 MFHAS1Q9Y4C4 1052 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 GRIN2DO15399 1336 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 SPATA31C2B4DYI2 1134 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 LSM1O15116 133 aaKnown RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 DDX6P26196 483 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 GLUD2P49448 558 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 HSDL1Q3SXM5 330 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 IRF2BP2Q7Z5L9 587 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 HID1Q8IV36 788 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 OR2T34Q8NGX1 318 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 OR2T3Q8NH03 318 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 SMG7Q92540 1137 aaKnown RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 PLLPQ9Y342 182 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 A0A1W2PQ72 361 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ITGB1P05556 798 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 MMP3P08254 477 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 AVPR1BP47901 424 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 DNASE1L3Q13609 305 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 DEFB115Q30KQ5 88 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ARL14EPQ8N8R7 260 aaPredicted RBP13.57□□□□□ -0.24
COL4A1-201ENST00000375820 CCDC54Q8NEL0 328 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 OR8H1Q8NGG4 311 aa13.57□□□□□ -0.24
COL4A1-201ENST00000375820 ELOVL7A1L3X0 281 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 RHPN2P1A8MT19 583 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 EDF1O60869 148 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TACR2P21452 398 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 HOXC12P31275 282 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PPM1AP35813 382 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 DGKEP52429 567 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TSPAN5P62079 268 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 AGAP2Q99490 1192 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 DUS2Q9NX74 493 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ARL5AQ9Y689 179 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 DLC1Q96QB1 1528 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PTNP21246 168 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 IDSP22304 550 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PTGES3Q15185 160 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CYP27C1Q4G0S4 372 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ZZZ3Q8IYH5 903 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SLC22A15Q8IZD6 547 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TOP6BLQ8N6T0 577 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ZNF781Q8N8C0 355 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SLC25A36Q96CQ1 311 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CST11Q9H112 138 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SP140LQ9H930 580 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ELOVL2Q9NXB9 296 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 MID1O15344 667 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 GSC2O15499 205 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CLPXO76031 633 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SNX4O95219 450 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 DHFRP00374 187 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SDC2P34741 201 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TEX44Q53QW1 395 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 RALGPS1Q5JS13 557 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PLPPR4Q7Z2D5 763 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SLC51AQ86UW1 340 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 GRHL3Q8TE85 626 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms