RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 OR4L1Q8NH43 312 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 NPLOC4Q8TAT6 608 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 VMP1Q96GC9 406 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 CGREF1Q99674 301 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 HGH1Q9BTY7 390 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 CARS2Q9HA77 564 aaKnown RBP20.9■□□□□ 0.94
UPF3A-202ENST00000375299 SMPD4Q9NXE4 827 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 KIAA1522Q9P206 1035 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-202ENST00000375299 DNAJB9Q9UBS3 223 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 NUDT5Q9UKK9 219 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 NAALAD2Q9Y3Q0 740 aa20.9■□□□□ 0.94
UPF3A-202ENST00000375299 LCHNA4D1U4 455 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 TREHO43280 583 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 NOBOXO60393 691 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 GMNNO75496 209 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 PCMT1P22061 227 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 AGTR2P50052 363 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 AFF1P51825 1210 aaKnown RBP20.89■□□□□ 0.94
UPF3A-202ENST00000375299 IST1P53990 364 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 MLLT6P55198 1093 aaPredicted RBP20.89■□□□□ 0.94
UPF3A-202ENST00000375299 ADAM17P78536 824 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 RAD51Q06609 339 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 PIK3R6Q5UE93 754 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 LAIR2Q6ISS4 152 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 LINC00299Q6ZSB3 139 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 RBM23Q86U06 439 aaKnown RBP20.89■□□□□ 0.94
UPF3A-202ENST00000375299 SLCO6A1Q86UG4 719 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 TEX26Q8N6G2 289 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 GAD1Q99259 594 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 SLC45A1Q9Y2W3 748 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 GIT1Q9Y2X7 761 aa20.89■□□□□ 0.94
UPF3A-202ENST00000375299 GPC6Q9Y625 555 aaPredicted RBP20.89■□□□□ 0.94
UPF3A-202ENST00000375299 DOCK4Q8N1I0 1966 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 PTPRDP23468 1912 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 UBA6A0AVT1 1052 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-202ENST00000375299 NCF1BA6NI72 391 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-202ENST00000375299 NCF1CA8MVU1 366 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-202ENST00000375299 CDC7O00311 574 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 ARNTLO00327 626 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 SLC1A7O00341 560 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 NDUFS2O75306 463 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 INMTO95050 263 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 THP07101 528 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 NCF1P14598 390 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-202ENST00000375299 GRIK1P39086 918 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 KCNAB2Q13303 367 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 TYSND1Q2T9J0 566 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 ATP6AP1LQ52LC2 224 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 TIGD5Q53EQ6 642 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 SETMARQ53H47 684 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-202ENST00000375299 TXNDC11Q6PKC3 985 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 CADM3Q8N126 398 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 PGBD5Q8N414 524 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 AADATQ8N5Z0 425 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 FAM86B1Q8N7N1 296 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 NAT16Q8N8M0 369 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 PIK3C3Q8NEB9 887 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 OR56A4Q8NGH8 313 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 PSMG2Q969U7 264 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 FUBP1Q96AE4 644 aaKnown RBP20.89■□□□□ 0.93
UPF3A-202ENST00000375299 NODALQ96S42 347 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 CORO1BQ9BR76 489 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 MIOSQ9NXC5 875 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 FAM50BQ9Y247 325 aa20.89■□□□□ 0.93
UPF3A-202ENST00000375299 FAM92AA1XBS5 289 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 NPEPPSL1A6NEC2 478 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 ENPP3O14638 875 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 KLK8O60259 260 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 KDM1AO60341 852 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 MGEA5O60502 916 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 SOAT2O75908 522 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 MFSD10Q14728 455 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 HABP4Q5JVS0 413 aaKnown RBP20.88■□□□□ 0.93
UPF3A-202ENST00000375299 FKBP9P1Q75LS8 142 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 SVOPLQ8N434 492 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 SCAIQ8N9R8 606 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 CCDC115Q96NT0 180 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 RBM4BQ9BQ04 359 aaKnown RBP20.88■□□□□ 0.93
UPF3A-202ENST00000375299 ACBD6Q9BR61 282 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 RBM4Q9BWF3 364 aaKnown RBP20.88■□□□□ 0.93
UPF3A-202ENST00000375299 TAS2R13Q9NYV9 303 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 MYO16Q9Y6X6 1858 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 CCL15-CCL14A0A0B4J2E2 113 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 ZNF99A8MXY4 864 aaPredicted RBP20.88■□□□□ 0.93
UPF3A-202ENST00000375299 CST1P01037 141 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 PRSS56P0CW18 603 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 PWP1Q13610 501 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 BCL2A1Q16548 175 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 CCL15Q16663 113 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 PRAMEF19Q5SWL8 479 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 MSANTD2Q6P1R3 559 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 GPRIN3Q6ZVF9 776 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 HS3ST5Q8IZT8 346 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 FBXO30Q8TB52 745 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 ZFP90Q8TF47 636 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 MED16Q9Y2X0 877 aa20.88■□□□□ 0.93
UPF3A-202ENST00000375299 CASTOR2A6NHX0 329 aa20.87■□□□□ 0.93
UPF3A-202ENST00000375299 AXIN1O15169 862 aa20.87■□□□□ 0.93
UPF3A-202ENST00000375299 KATNA1O75449 491 aa20.87■□□□□ 0.93
UPF3A-202ENST00000375299 GABARAPO95166 117 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms