RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CKBP12277 381 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 ITIH1P19827 911 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 PPP1R8Q12972 351 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 TIGD6Q17RP2 521 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 INTS6LQ5JSJ4 861 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 RASSF5Q8WWW0 418 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 BRD9Q9H8M2 597 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 MALT1Q9UDY8 824 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 PTBP2Q9UKA9 531 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC25A14O95258 325 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 IFNW1P05000 195 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 SNRPD1P62314 119 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 LYPLAL1Q5VWZ2 237 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 USP30Q70CQ3 517 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 NAT16Q8N8M0 369 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 EIF2B4Q9UI10 523 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 DNMT3LQ9UJW3 386 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 DHRS7Q9Y394 339 aa19.33■□□□□ 0.68
CCDC88B-202ENST00000356786 PABPC4LP0CB38 370 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 DSC2Q02487 901 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 PLEKHG6Q3KR16 790 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 HECTD3Q5T447 861 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 CXorf57Q6NSI4 855 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 CLIP4Q8N3C7 705 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TRPV3Q8NET8 790 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 CMASQ8NFW8 434 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 PCDHGA3Q9Y5H0 932 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TRPV2Q9Y5S1 764 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 AFDNP55196 1824 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 CCNCP24863 283 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TAS2R41P59536 307 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TSTD2Q5T7W7 516 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 NIPAL1Q6NVV3 410 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 RD3Q7Z3Z2 195 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TOP6BLQ8N6T0 577 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 FAXDC2Q96IV6 333 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TRIT1Q9H3H1 467 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 GPN1Q9HCN4 374 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TBCCD1Q9NVR7 557 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 PCDHA2Q9Y5H9 948 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 BCAS2O75934 225 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF182P17025 639 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 PLD1Q13393 1074 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TATDN1Q6P1N9 297 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 OR8H3Q8N146 312 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 LRRC58Q96CX6 371 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 ANKRA2Q9H9E1 313 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 GOLGA2P5Q9HBQ8 144 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TMEM9Q9P0T7 183 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 PPP2R3BQ9Y5P8 575 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 BCL9LQ86UU0 1499 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 NRCAMQ92823 1304 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TMEM233B4DJY2 109 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 GABBR2O75899 941 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 NDST3O95803 873 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 TFPTP0C1Z6 253 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 PTGS2P35354 604 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 AAASQ9NRG9 546 aa19.32■□□□□ 0.68
CCDC88B-202ENST00000356786 FAM159BA6NKW6 160 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 ATXN1P54253 815 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 DNASE1L3Q13609 305 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 EMC10Q5UCC4 262 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CATSPERGQ6ZRH7 1159 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 STON2Q8WXE9 905 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CFL2Q9Y281 166 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CXCL11O14625 94 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 TYROBPO43914 113 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CXCR3P49682 368 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CEP295NLQ96MC4 621 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 SPG21Q9NZD8 308 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CPA4Q9UI42 421 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CLDN9O95484 217 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 FAUP35544 74 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 EIF2B5Q13144 721 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 FAM92BQ6ZTR7 304 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 LIX1Q8N485 282 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 NIPA2Q8N8Q9 360 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 STYXQ8WUJ0 223 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 XAGE5Q8WWM1 108 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 ACAT2Q9BWD1 397 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC25A51Q9H1U9 297 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 TEX264Q9Y6I9 313 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 ABCC6O95255 1503 aa19.31■□□□□ 0.68
CCDC88B-202ENST00000356786 CHST10O43529 356 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 MPZL2O60487 215 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC1A2P43004 574 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 EEFSECP57772 596 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 MOGSQ13724 837 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CACUL1Q86Y37 369 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CRYBG2Q8N1P7 616 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF433Q8N7K0 673 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 TMBIM1Q969X1 311 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 S100A13Q99584 98 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 IRF2BPLQ9H1B7 796 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 COMMD3Q9UBI1 195 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CLIC3O95833 236 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 PSKH1P11801 424 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 ZBTB6Q15916 424 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CRTC2Q53ET0 693 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 MON1AQ86VX9 555 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms