RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RECQLP46063 649 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 SULT1E1P49888 294 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CRYBA2P53672 197 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 INHBCP55103 352 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ADARP55265 1226 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 ARL4CP56559 192 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ERVFRD-1P60508 538 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C1QTNF8P60827 252 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ALDH6A1Q02252 535 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 SP3Q02447 781 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CD69Q07108 199 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 BST1Q10588 318 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TRPC3Q13507 836 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 BMPR2Q13873 1038 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CCNIQ14094 377 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CPEB4Q17RY0 729 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS54-202ENST00000354504 INSCQ1MX18 579 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SKIDA1Q1XH10 827 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 IQCCQ4KMZ1 466 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC9B1Q4ZJI4 515 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 XKR7Q5GH72 579 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SIRPB2Q5JXA9 342 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 BRMS1LQ5PSV4 323 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 RBM20Q5T481 1227 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 NUGGCQ68CJ6 796 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 OR6B2Q6IFH4 312 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 LVRNQ6Q4G3 990 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CES3Q6UWW8 571 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DSTYKQ6XUX3 929 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FAM43BQ6ZT52 329 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 LRRC8DQ7L1W4 858 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ZNF551Q7Z340 670 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 ISCA2Q86U28 154 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DENND6AQ8IWF6 608 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SRRM1Q8IYB3 904 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 TXNDC5Q8NBS9 432 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 HASPINQ8TF76 798 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 L3HYPDHQ96EM0 354 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CAPNS2Q96L46 248 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C3orf30Q96M34 536 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CYP2S1Q96SQ9 504 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HERC2P3Q9BVR0 1158 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SARGQ9BW04 601 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PITPNM3Q9BZ71 974 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 NMUR2Q9GZQ4 415 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 IL22Q9GZX6 179 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PRO3102Q9H379 93 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DENND2DQ9H6A0 471 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 CAB39LQ9H9S4 337 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ZMAT3Q9HA38 289 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 PPANQ9NQ55 473 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 TBK1Q9UHD2 729 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 VPS28Q9UK41 221 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ADAM28Q9UKQ2 775 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 LRRC42Q9Y546 428 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 KCTD3Q9Y597 815 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 IRAK3Q9Y616 596 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TSPAN11A1L157 253 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CFAP69A5D8W1 941 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZNF503-AS2A6NEH8 195 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TCAF2A6NFQ2 919 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 OTOL1A6NHN0 477 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 MATN2O00339 956 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KIAA0355O15063 1070 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MCF2LO15068 1137 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ERLIN2O94905 339 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 HAUS5O94927 633 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SNUPNO95149 360 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 IPO7O95373 1038 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 SEMG1P04279 462 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 C1SP09871 688 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FAM200BP0CF97 657 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NQO1P15559 274 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 BGNP21810 368 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 HPDP32754 393 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 GLRBP48167 497 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KCNQ1P51787 676 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NDST2P52849 883 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DNAJB13P59910 316 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PDE1BQ01064 536 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SREBF2Q12772 1141 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NAB1Q13506 487 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 HNRNPDQ14103 355 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 PTPRCAPQ14761 206 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NAA25Q14CX7 972 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DCAF6Q58WW2 860 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MROH9Q5TGP6 573 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KANK2Q63ZY3 851 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CYB5D1Q6P9G0 228 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CNSTQ6PJW8 725 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 C4orf22Q6V702 233 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LARP4Q71RC2 724 aaKnown RBP eCLIP2.3□□□□□ -2.04
VPS54-202ENST00000354504 CMC1Q7Z7K0 106 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CIR1Q86X95 450 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 C10orf107Q8IVU9 208 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GPR65Q8IYL9 337 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 HACE1Q8IYU2 909 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 C10orf111Q8N326 155 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PRR18Q8N4B5 295 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DCLK2Q8N568 766 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms