RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FFAR2O15552 330 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 PIAS1O75925 651 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 LDLRP01130 860 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ALPPL2P10696 532 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HPGDP15428 266 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 C5AR1P21730 350 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 FASP25445 335 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 EPHA3P29320 983 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF33BQ06732 778 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TBL3Q12788 808 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HLA-DQA1Q5Y7H0 255 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 CRTC3Q6UUV7 619 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 SPATA19Q7Z5L4 167 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 LONP2Q86WA8 852 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ZDHHC14Q8IZN3 488 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 CPEB1Q9BZB8 566 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 GGT7Q9UJ14 662 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 C2orf71A6NGG8 1288 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 H3BNC9 293 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 M0R3G1 203 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 BANF1O75531 89 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HNRNPLP14866 589 aaKnown RBP eCLIP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HMGA1P17096 107 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 VHLP40337 213 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 NRLP54845 237 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 IL1RL1Q01638 556 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TRAF2Q12933 501 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ABRQ12979 859 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 NDUFA9Q16795 377 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 FAM98BQ52LJ0 330 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 PRR23BQ6ZRT6 265 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 HDDC3Q8N4P3 179 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TRIB3Q96RU7 358 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 DERL2Q9GZP9 239 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 OXSMQ9NWU1 459 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 CXXC1Q9P0U4 656 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TDRKHQ9Y2W6 561 aaKnown RBP6.78□□□□□ -1.32
SF3B1-201ENST00000335508 DTNAQ9Y4J8 743 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 TAF1P21675 1872 aa6.78□□□□□ -1.32
SF3B1-201ENST00000335508 ATXN2Q99700 1313 aaKnown RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 ATP6AP2A0A1C7CYW4 349 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 GPR89AB7ZAQ6 455 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 NR5A2O00482 541 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 ATP6AP2O75787 350 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 WDR47O94967 919 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 GPR89BP0CG08 455 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 EN2P19622 333 aaPredicted RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 DGKEP52429 567 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 GPX6P59796 221 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 SRSF11Q05519 484 aaKnown RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 KLF10Q13118 480 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 KCNC3Q14003 757 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 ZCCHC8Q6NZY4 707 aaKnown RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 ERICH5Q6P6B1 374 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 DHFR2Q86XF0 187 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 LINC01599Q8WXQ3 324 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 AHCYL2Q96HN2 611 aaKnown RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 RIOK2Q9BVS4 552 aaKnown RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 MIR1-1HGQ9H1L0 117 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 MUC13Q9H3R2 512 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 NLE1Q9NVX2 485 aaPredicted RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 POLR3BQ9NW08 1133 aaPredicted RBP6.77□□□□□ -1.32
SF3B1-201ENST00000335508 C1orf109Q9NX04 203 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 IL37Q9NZH6 218 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 SIRPGQ9P1W8 387 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 CD207Q9UJ71 328 aa6.77□□□□□ -1.32
SF3B1-201ENST00000335508 SMCHD1A6NHR9 2005 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 A0A0D9SEW6 157 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CCL22O00626 93 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A9O60656 530 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PRMT3O60678 531 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 FSBPO95073 299 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SRCP12931 536 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A6P19224 532 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A1P22309 533 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A4P22310 534 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SP100P23497 879 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A3P35503 534 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A5P35504 534 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PIK3CBP42338 1070 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SMIM11AP58511 58 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PSME3P61289 254 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 RFX4Q33E94 735 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PUS10Q3MIT2 529 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 AP1ARQ63HQ0 302 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 TRIM68Q6AZZ1 485 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF852Q6ZMS4 543 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 GAREM2Q75VX8 874 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM25Q86YD3 366 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 TRAM1L1Q8N609 369 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A7Q9HAW7 530 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A10Q9HAW8 530 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 UGT1A8Q9HAW9 530 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 LRTM1Q9HBL6 345 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 DKK3Q9UBP4 350 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 EPN2O95208 641 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SEC24AO95486 1093 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 KRT20P35900 424 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 VIPR2P41587 438 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms