RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 ARHGAP8P85298 464 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PPP3CAQ08209 521 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 BOP1Q14137 746 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 RFTN1Q14699 578 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 SUSD4Q5VX71 490 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 DNAJC14Q6Y2X3 702 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 TRMT11Q7Z4G4 463 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 FAM84BQ96KN1 310 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 GFM1Q96RP9 751 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 TSNAXQ99598 290 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 DCSTAMPQ9H295 470 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 GDAP2Q9NXN4 497 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 MYOM1P52179 1685 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CYB561D2O14569 222 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 JCHAINP01591 159 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 HMGN1P05114 100 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PABPC4LP0CB38 370 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 IRF1P10914 325 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 RYKP34925 604 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 BUD31P41223 144 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 KLF10Q13118 480 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 MIIPQ5JXC2 388 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PLEKHG7Q6ZR37 379 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 BRSK2Q8IWQ3 736 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 ARMC10Q8N2F6 343 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 HERC2P3Q9BVR0 1158 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CDADC1Q9BWV3 514 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 BLOC1S4Q9NUP1 217 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 TBC1D14Q9P2M4 693 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 GTF2IRD1Q9UHL9 959 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PRR12Q9ULL5 1215 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PLA2G4CQ9UP65 541 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 SULT1C2O00338 296 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 ADAMTS3O15072 1205 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 NARSO43776 548 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CLDN9O95484 217 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 NUDT14O95848 222 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 TRBC1P01850 177 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CD40LGP29965 261 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PLK1P53350 603 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 NCS1P62166 190 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 SNAPC2Q13487 334 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CXorf57Q6NSI4 855 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 ZNF782Q6ZMW2 699 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 SPATA22Q8NHS9 363 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 MRPS31Q92665 395 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PI4K2AQ9BTU6 479 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CHST7Q9NS84 486 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 ACSL5Q9ULC5 683 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 EXOSC1Q9Y3B2 195 aaKnown RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 IFNA10P01566 189 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 IFNA4P05014 189 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 IMPDH1P20839 514 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CHMP24386 653 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CCR10P46092 362 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 NRIP1P48552 1158 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 RGS6P49758 472 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 ETV1P50549 477 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 NAGLUP54802 743 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 VAMP2P63027 116 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 IRF8Q02556 426 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 DSG2Q14126 1118 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 FAM46CQ5VWP2 391 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 GJB7Q6PEY0 223 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CARNMT1Q8N4J0 409 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 BEND7Q8N7W2 519 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 SLC44A5Q8NCS7 719 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 OR4C6Q8NH72 309 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 ACSF2Q96CM8 615 aaPredicted RBP5.47□□□□□ -1.53
PTPRB-202ENST00000334414 HSFY1Q96LI6 401 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 PNMA5Q96PV4 448 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 GBA3Q9H227 469 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 C1orf109Q9NX04 203 aa5.47□□□□□ -1.53
PTPRB-202ENST00000334414 CXCR6O00574 342 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 MIPP30301 263 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 EPHB3P54753 998 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 ACTC1P68032 377 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 ACTA1P68133 377 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 FASTKD3Q14CZ7 662 aaKnown RBP5.46□□□□□ -1.53
PTPRB-202ENST00000334414 FIP1L1Q6UN15 594 aaKnown RBP5.46□□□□□ -1.53
PTPRB-202ENST00000334414 TWIST2Q8WVJ9 160 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 DNAJC1Q96KC8 554 aaKnown RBP5.46□□□□□ -1.53
PTPRB-202ENST00000334414 COL21A1Q96P44 957 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 NDC1Q9BTX1 674 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 RAB11FIP5Q9BXF6 653 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 RIOX1Q9H6W3 641 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 TMEM27Q9HBJ8 222 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 C3P01024 1663 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 RBMXL2O75526 392 aaKnown RBP5.46□□□□□ -1.53
PTPRB-202ENST00000334414 CRYZL1O95825 349 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 GNAO1P09471 354 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 PDHA2P29803 388 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 TOB1P50616 345 aaPredicted RBP5.46□□□□□ -1.53
PTPRB-202ENST00000334414 MLLT6P55198 1093 aaPredicted RBP5.46□□□□□ -1.53
PTPRB-202ENST00000334414 PPP4CP60510 307 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 SLC27A1Q6PCB7 646 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 RNF44Q7L0R7 432 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 PRELID2Q8N945 189 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 LRRN4CLQ8ND94 238 aa5.46□□□□□ -1.53
PTPRB-202ENST00000334414 GEMIN6Q8WXD5 167 aaKnown RBP5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms