RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ANKDD1BA6NHY2 528 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 MSI1O43347 362 aaKnown RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 SERPINB7O75635 380 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 OR5F1O95221 314 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 IFNA7P01567 189 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CD48P09326 243 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 EPORP19235 508 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 NTSP30990 170 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CPSF6Q16630 551 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS39-201ENST00000318006 AP5B1Q2VPB7 878 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 TTPALQ9BTX7 342 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 RACGAP1Q9H0H5 632 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ATP13A3Q9H7F0 1226 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CFL2Q9Y281 166 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 NT5C1B-RDH14C9J2C7 533 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 TNFRSF11BO00300 401 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 SLC9A3R1O14745 358 aaPredicted RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 NCK1P16333 377 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 LPOP22079 712 aaPredicted RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 JAG1P78504 1218 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CREMQ03060 361 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 LSAMPQ13449 338 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 SIAH1Q8IUQ4 282 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 GALNT12Q8IXK2 581 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 PLEKHO2Q8TD55 490 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 IRGQQ8WZA9 623 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 UBE2E3Q969T4 207 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 SHISA4Q96DD7 197 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 EXOC2Q96KP1 924 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 BTN2A3PQ96KV6 586 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 KLHL5Q96PQ7 755 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CNPPD1Q9BV87 410 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ASAH2Q9NR71 780 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 AGO1Q9UL18 857 aaKnown RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 C5P01031 1676 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 A0A1W2PPW3 197 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 A0A1W2PQH9 124 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 OR6C70A6NIJ9 312 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 LRATO95237 230 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CES1P23141 567 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 PTPN3P26045 913 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 OR1D2P34982 312 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 GNPDA1P46926 289 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 MTAPQ13126 283 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ZNF423Q2M1K9 1284 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 SETMARQ53H47 684 aaPredicted RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 INTS6LQ5JSJ4 861 aaKnown RBP11.39□□□□□ -0.59
VPS39-201ENST00000318006 HECTD2Q5U5R9 776 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 CLEC6AQ6EIG7 209 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 LAPTM4BQ86VI4 370 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 PPP1R14AQ96A00 147 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ANKRA2Q9H9E1 313 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 ZNHIT2Q9UHR6 403 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 MFHAS1Q9Y4C4 1052 aa11.39□□□□□ -0.59
VPS39-201ENST00000318006 I3L521 148 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ASGR1P07306 291 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 MAZP56270 477 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 HSPA14Q0VDF9 509 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 TAF10Q12962 218 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 SGCGQ13326 291 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FSTL4Q6MZW2 842 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 R3HCC1LQ7Z5L2 792 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 METTL3Q86U44 580 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 OR5K1Q8NHB7 308 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 LINGO1Q96FE5 620 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 PKP2Q99959 881 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 TRIT1Q9H3H1 467 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 ISPDA4D126 451 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 OR14I1A6ND48 311 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FZD9O00144 591 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 TOP3BO95985 862 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 NR2F1P10589 423 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ELNP15502 786 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ASPAP45381 313 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ALDH3A2P51648 485 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 CLCNKBP51801 687 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 DUSP4Q13115 394 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 SLC9B1Q4ZJI4 515 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 PITRM1Q5JRX3 1037 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FBXL19Q6PCT2 694 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 SYCE2Q6PIF2 218 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 DEF8Q6ZN54 512 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 TMEM126BQ8IUX1 230 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 UBE2J2Q8N2K1 259 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 GALNT6Q8NCL4 622 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 OR4L1Q8NH43 312 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ZNF516Q92618 1163 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 TRNT1Q96Q11 434 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 ZNF607Q96SK3 696 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 AGAP2Q99490 1192 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 DPEP3Q9H4B8 488 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ARHGEF4Q9NR80 690 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ZNF536O15090 1300 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 TP73O15350 636 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 OR6A2O95222 327 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ZNF806P0C7X5 589 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 SLC15A1P46059 708 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 MXD1Q05195 221 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FNDC3BQ53EP0 1204 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms