RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CCDC50Q8IVM0 306 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 CACNA2D3Q8IZS8 1091 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 IL22RA1Q8N6P7 574 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 IPMKQ8NFU5 416 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 GDAP1Q8TB36 358 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 BLOC1S5Q8TDH9 187 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 PANX2Q96RD6 677 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 ZPBPQ9BS86 351 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 C10orf88Q9H8K7 445 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 UGT1A7Q9HAW7 530 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 UGT1A10Q9HAW8 530 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 UGT1A8Q9HAW9 530 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 LUC7LQ9NQ29 371 aaKnown RBP9.56□□□□□ -0.88
VPS41-201ENST00000265745 POT1Q9NUX5 634 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 KLHL3Q9UH77 587 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 RSPH14Q9UHP6 348 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 WDR37Q9Y2I8 494 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 PCDHGA11Q9Y5H2 935 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 PCDHA3Q9Y5H8 950 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 DUSP10Q9Y6W6 482 aa9.56□□□□□ -0.88
VPS41-201ENST00000265745 FLNBO75369 2602 aaKnown RBP9.56□□□□□ -0.88
VPS41-201ENST00000265745 MN1Q10571 1320 aaPredicted RBP9.56□□□□□ -0.88
VPS41-201ENST00000265745 GLYATL1P3A0A0U1RQE8 302 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 OR52A4PA6NMU1 304 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 H7C0C1 242 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 J3QKU1 62 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 GAPDHSO14556 408 aaPredicted RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 POLR1CO15160 346 aaPredicted RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 TOX3O15405 576 aaPredicted RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 GPR39O43194 453 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 BUD23O43709 281 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 RAD1O60671 282 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 KCNJ13O60928 360 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 PPFIA2O75334 1257 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 POP7O75817 140 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 NDUFA10O95299 355 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 FAM87AP0C7U9 286 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 LIFP15018 202 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TYRP1P17643 537 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 AMD1P17707 334 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 VCLP18206 1134 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 ITGB6P18564 788 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 RBL1P28749 1068 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 CTNNA1P35221 906 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 SPAM1P38567 509 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 ATP5OP48047 213 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 CTSCP53634 463 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 GFERP55789 205 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 GTF2H3Q13889 308 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 PTPRCAPQ14761 206 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 OCLNQ16625 522 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 LDLRAP1Q5SW96 308 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 CEACAM20Q6UY09 585 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TIPARPQ7Z3E1 657 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 GLT6D1Q7Z4J2 308 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 AMZ2Q86W34 360 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TRAPPC5Q8IUR0 188 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TMTC1Q8IUR5 882 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TRIM48Q8IWZ4 208 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 RBM12BQ8IXT5 1001 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 NLGN4XQ8N0W4 816 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 RASGEF1AQ8N9B8 481 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 DDHD1Q8NEL9 900 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 NLGN4YQ8NFZ3 816 aaPredicted RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 ACTL9Q8TC94 416 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 C9orf72Q96LT7 481 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TTC25Q96NG3 672 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 GORASP1Q9BQQ3 440 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 GBA3Q9H227 469 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 APMAPQ9HDC9 416 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 STARD5Q9NSY2 213 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 SIDT1Q9NXL6 827 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 TRIM10Q9UDY6 481 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 REXO2Q9Y3B8 237 aaKnown RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 PKP3Q9Y446 797 aa9.55□□□□□ -0.88
VPS41-201ENST00000265745 TMEM184BQ9Y519 407 aaPredicted RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 DNMT3AQ9Y6K1 912 aaPredicted RBP9.55□□□□□ -0.88
VPS41-201ENST00000265745 COL6A6A6NMZ7 2263 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 BTNL10A8MVZ5 291 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 STX7O15400 261 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 CAPN5O15484 640 aaPredicted RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 ANXA9O76027 345 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 STK17BO94768 372 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ZIC2O95409 532 aaPredicted RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 S1PR4O95977 384 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 SFTPCP11686 197 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 MAP4P27816 1152 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 PTPN7P35236 360 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 ADRA1AP35348 466 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 LEPRP48357 1165 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 ZNF75DP51815 510 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 GEMP55040 296 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 OTUD4Q01804 1114 aaKnown RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 DMPKQ09013 629 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 MSLNQ13421 630 aaPredicted RBP9.54□□□□□ -0.88
VPS41-201ENST00000265745 ITGA9Q13797 1035 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 GPR18Q14330 331 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 GPRC6AQ5T6X5 926 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 METRNLQ641Q3 311 aa9.54□□□□□ -0.88
VPS41-201ENST00000265745 TMEM220Q6QAJ8 160 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms