RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CCDC85CA6NKD9 419 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 HNRNPDQ14103 355 aaKnown RBP18.95■□□□□ 0.62
UPF1-201ENST00000262803 DPY19L1Q2PZI1 675 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 LRRC17Q8N6Y2 441 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 SLC38A4Q969I6 547 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 ABLIM1O14639 778 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 ALDH4A1P30038 563 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 ZYG11AQ6WRX3 759 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 ZBTB46Q86UZ6 589 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 ZNF567Q8N184 647 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 CLEC4DQ8WXI8 215 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 DGCR14Q96DF8 476 aaKnown RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.94■□□□□ 0.62
UPF1-201ENST00000262803 CDC14AQ9UNH5 594 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 C2CD4BA6NLJ0 364 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 RIIAD1A6NNX1 92 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 LIN7AO14910 233 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 SCNN1AP37088 669 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 MSANTD2Q6P1R3 559 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 ZNF730Q6ZMV8 503 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 RBM23Q86U06 439 aaKnown RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 C12orf42Q96LP6 360 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 IL12RB2Q99665 862 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 BRINP2Q9C0B6 783 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 XPNPEP1Q9NQW7 623 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 MYO5BQ9ULV0 1848 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 G3V2T6 193 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 IL12AP29459 219 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 POLR2JP52435 117 aaKnown RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 HEPACAMQ14CZ8 416 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 TAF1AQ15573 450 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 DENND5AQ6IQ26 1287 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 PYROXD2Q8N2H3 581 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 CNTD1Q8N815 330 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 GLB1L3Q8NCI6 653 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 HM13Q8TCT9 377 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 CIB1Q99828 191 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 RBM4BQ9BQ04 359 aaKnown RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 RBM4Q9BWF3 364 aaKnown RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 GPN1Q9HCN4 374 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 KCNU1A8MYU2 1149 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 UNGP13051 313 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 SP100P23497 879 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 CYP1B1Q16678 543 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 RFKQ969G6 155 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 EVLQ9UI08 416 aaPredicted RBP18.94■□□□□ 0.62
UPF1-201ENST00000262803 COQ4Q9Y3A0 265 aa18.94■□□□□ 0.62
UPF1-201ENST00000262803 FAM92AA1XBS5 289 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 EME2A4GXA9 379 aaPredicted RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 PRORSD1PA6NEY8 169 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 TULP3O75386 442 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 SRPRAP08240 638 aaKnown RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 GMFBP60983 142 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 VBP1P61758 197 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 LCP2Q13094 533 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 DENND1AQ8TEH3 1009 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 LCN9Q8WX39 176 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 TMEM138Q9NPI0 162 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 ADGRE2Q9UHX3 823 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 AJAP1Q9UKB5 411 aaPredicted RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 STXBP5LQ9Y2K9 1186 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 FADS3Q9Y5Q0 445 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 RFC2P35250 354 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 MNDAP41218 407 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 MPP1Q00013 466 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 ZNF572Q7Z3I7 529 aaPredicted RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 OR6K2Q8NGY2 324 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 CAPNS2Q96L46 248 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 WDR12Q9GZL7 423 aaKnown RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 ADAMTS3O15072 1205 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 RAB30Q15771 203 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 NAT16Q8N8M0 369 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 ABCB10Q9NRK6 738 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 RASGRP1O95267 797 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 NT5EP21589 574 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 NSG1P42857 185 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 PYDC2Q56P42 97 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 BTN2A1Q7KYR7 527 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 PGAM4Q8N0Y7 254 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 SHDQ96IW2 340 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 LENG8Q96PV6 779 aaPredicted RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 SLC38A8A6NNN8 435 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 NT5C1B-RDH14C9J2C7 533 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 GABRDO14764 452 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 ADAMDEC1O15204 470 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 SLC22A2O15244 555 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 PI15O43692 258 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 SSNA1O43805 119 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 MATN4O95460 622 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 IFNW1P05000 195 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 NRG1Q02297 640 aaPredicted RBP18.93■□□□□ 0.62
UPF1-201ENST00000262803 C11orf65Q8NCR3 313 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 PIGXQ8TBF5 258 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 DMTF1Q9Y222 760 aa18.93■□□□□ 0.62
UPF1-201ENST00000262803 SLC7A4O43246 635 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 ALOX5P09917 674 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 PIM1P11309 404 aaPredicted RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 KHKP50053 298 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 RPS6KA3P51812 740 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 CCNIQ14094 377 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms