RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 UGT2B4P06133 528 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 TYRP14679 529 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 PRDX3P30048 256 aaKnown RBP12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 MSX2P35548 267 aaPredicted RBP12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 ARL1P40616 181 aaPredicted RBP12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 NSG1P42857 185 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 NME5P56597 212 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 MS4A2Q01362 244 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 SEMG2Q02383 582 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 KLC1Q07866 573 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 BLMHQ13867 455 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 CRY1Q16526 586 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 TTLL9Q3SXZ7 439 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 ANO7Q6IWH7 933 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 IRGCQ6NXR0 463 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 PDPRQ8NCN5 879 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 SPPL3Q8TCT6 385 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 GDPD5Q8WTR4 605 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 BADQ92934 168 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 VOPP1Q96AW1 172 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 ASB9Q96DX5 294 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 MCCC1Q96RQ3 725 aaPredicted RBP12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 KLHL4Q9C0H6 718 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 SDR39U1Q9NRG7 319 aaPredicted RBP12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 ZNF225Q9UK10 706 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 OARD1Q9Y530 152 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 ASB1Q9Y576 335 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 SLC4A7Q9Y6M7 1214 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 PIKFYVEQ9Y2I7 2098 aa12.76□□□□□ -0.37
SPTLC1-201ENST00000262554 AGAP14A8MT82 685 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 ACOT8O14734 319 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 ANGPT2O15123 496 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 XYLBO75191 536 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 OR4F21O95013 312 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 PRR35P0CG20 571 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 TCN1P20061 433 aaPredicted RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 HOXA9P31269 272 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 RECQLP46063 649 aaPredicted RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 POLR2LP62875 67 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 MRPS22P82650 360 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 PTSQ03393 145 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 GTF2H2Q13888 395 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 TRIM25Q14258 630 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 TRIP10Q15642 601 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 SLC5A9Q2M3M2 681 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 XKR7Q5GH72 579 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 SAMD4BQ5PRF9 694 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 GPRC6AQ5T6X5 926 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 GTF2H2CQ6P1K8 395 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 LAYNQ6UX15 382 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 GOLGA7Q7Z5G4 137 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 CDYL2Q8N8U2 506 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 NAT14Q8WUY8 206 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 PBXIP1Q96AQ6 731 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 ULK4Q96C45 1275 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 NOL11Q9H8H0 719 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 ZDHHC3Q9NYG2 299 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 SLCO3A1Q9UIG8 710 aa12.75□□□□□ -0.37
SPTLC1-201ENST00000262554 CASQ2O14958 399 aaPredicted RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 TRIM24O15164 1050 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 HNRNPA1P09651 372 aaKnown RBP eCLIP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 POLR2EP19388 210 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 MRPL19P49406 292 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 MRPS35P82673 323 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 UBE3AQ05086 875 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 GRIK2Q13002 908 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 ZNF77Q15935 545 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 MAP7D1Q3KQU3 841 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 LY6G5CQ5SRR4 150 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 TMEM240Q5SV17 173 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 LPCAT4Q643R3 524 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 C8orf82Q6P1X6 216 aaPredicted RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 PRMT9Q6P2P2 845 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 PSRC1Q6PGN9 363 aaPredicted RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 GDPD4Q6W3E5 623 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 Q6ZVU0 165 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 PQLC1Q8N2U9 271 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 OR52B6Q8NGF0 335 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 ATP6V1E2Q96A05 226 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 COPS8Q99627 209 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 EGFL8Q99944 293 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 LINC00597Q9H2U6 94 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 BRD9Q9H8M2 597 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 LATS2Q9NRM7 1088 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 KCTD5Q9NXV2 234 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 PTBP2Q9UKA9 531 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 RWDD3Q9Y3V2 267 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 GPR45Q9Y5Y3 372 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 KIAA0100Q14667 2235 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 NOTCH4Q99466 2003 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 PEX1O43933 1283 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 GUCA1CO95843 209 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 OTCP00480 354 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 CBSLP0DN79 551 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 VCLP18206 1134 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 LHCGRP22888 699 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 PEX2P28328 305 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 CBSP35520 551 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 ERVPABLB-1P60509 514 aa12.74□□□□□ -0.37
SPTLC1-201ENST00000262554 ERVK-8P63133 956 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms