RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SERPINB10P48595 397 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 CLK3P49761 638 aaKnown RBP14.21□□□□□ -0.14
SDC1-201ENST00000254351 SGO1Q5FBB7 561 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 TTC23Q5W5X9 447 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 CLEC20AQ6ZU45 233 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 S100ZQ8WXG8 99 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 LGALS12Q96DT0 336 aa14.21□□□□□ -0.14
SDC1-201ENST00000254351 MT-ND2P03891 347 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 NPR3P17342 541 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 SOX4Q06945 474 aaPredicted RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 TSNQ15631 228 aaKnown RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 RBM48Q5RL73 367 aaKnown RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 GCNT7Q6ZNI0 430 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 PHYKPLQ8IUZ5 450 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 LYSMD2Q8IV50 215 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 UBE2J2Q8N2K1 259 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 TTC30BQ8N4P2 665 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 BEST2Q8NFU1 509 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 HDAC2Q92769 488 aaKnown RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 CITED4Q96RK1 184 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 CDK5RAP1Q96SZ6 601 aaKnown RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 OSMRQ99650 979 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 TRIM54Q9BYV2 358 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 SLC39A8Q9C0K1 460 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 RNF112Q9ULX5 631 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 ASB1Q9Y576 335 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 GPR45Q9Y5Y3 372 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 CD36P16671 472 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 MASP1P48740 699 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 DAB2P98082 770 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 GTDC1Q4AE62 458 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 SNAP47Q5SQN1 464 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 LAIR1Q6GTX8 287 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 APOBEC3FQ8IUX4 373 aaKnown RBP14.2□□□□□ -0.14
SDC1-201ENST00000254351 PYCR2Q96C36 320 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 B3GALT6Q96L58 329 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 MRGPRX2Q96LB1 330 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 CYP2S1Q96SQ9 504 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 HOXC10Q9NYD6 342 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 GTF2IRD1Q9UHL9 959 aa14.2□□□□□ -0.14
SDC1-201ENST00000254351 A0A0U1RQS6 177 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 TTC34A8MYJ7 566 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 CDC7O00311 574 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 BCKDKO14874 412 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 HSMCR30P0CW71 290 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 C18orf21Q32NC0 220 aaPredicted RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 FAM209AQ5JX71 171 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 CCBE1Q6UXH8 406 aaPredicted RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 BPIFB1Q8TDL5 484 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 SLC47A1Q96FL8 570 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ROGDIQ9GZN7 287 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 TNKS2Q9H2K2 1166 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ACTR8Q9H981 624 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ADARB2Q9NS39 739 aaKnown RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 ZMYM5Q9UJ78 669 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 FBXW11Q9UKB1 542 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 IKZF3Q9UKT9 509 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ARL5AQ9Y689 179 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 NUAK1O60285 661 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ANXA6P08133 673 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 RAP2AP10114 183 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 PCMT1P22061 227 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 POLD2P49005 469 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ARPC4P59998 168 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ISL1P61371 349 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 CCDC58Q4VC31 144 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 LILRB4Q8NHJ6 448 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 UBXN10Q96LJ8 280 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 LRRC3Q9BY71 257 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 DUSP16Q9BY84 665 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 YTHDF1Q9BYJ9 559 aaKnown RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 IKZF5Q9H5V7 419 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 POLR3BQ9NW08 1133 aaPredicted RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 LEF1Q9UJU2 399 aaPredicted RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 INTS6Q9UL03 887 aaKnown RBP14.19□□□□□ -0.14
SDC1-201ENST00000254351 EFCAB9A8MZ26 197 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 HBP1O60381 514 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 OR4F21O95013 312 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 G6PDP11413 515 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 CDK5R2Q13319 367 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 PTGR1Q14914 329 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 CLCA4Q14CN2 919 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 SNX17Q15036 470 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 RAP1GAP2Q684P5 730 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 GADL1Q6ZQY3 521 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 CILP2Q8IUL8 1156 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 TMEM199Q8N511 208 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 NECTIN4Q96NY8 510 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 EMILIN2Q9BXX0 1053 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 ZFP14Q9HCL3 533 aa14.19□□□□□ -0.14
SDC1-201ENST00000254351 MYBPHLA2RUH7 354 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 H0Y626 953 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 NCAM2O15394 837 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 ANXA9O76027 345 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 TRIM16O95361 564 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 CASP3P42574 277 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 DSC2Q02487 901 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 KIAA0319Q5VV43 1072 aa14.18□□□□□ -0.14
SDC1-201ENST00000254351 PAQR9Q6ZVX9 377 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms