RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CDH17Q12864 832 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 NFE2L1Q14494 772 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 TMEM71Q6P5X7 295 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 SPACA3Q8IXA5 215 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 PRELID2Q8N945 189 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 DNAAF3Q8N9W5 541 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 AVL9Q8NBF6 648 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 TMEM159Q96B96 161 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 CDKN2AIPNLQ96HQ2 116 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 ZNF514Q96K75 400 aaPredicted RBP22.54■■□□□ 1.2
LSM4-201ENST00000252816 CMKLR1Q99788 373 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 JRKLQ9Y4A0 524 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 SLC30A1Q9Y6M5 507 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 FAM208BQ5VWN6 2430 aa22.54■■□□□ 1.2
LSM4-201ENST00000252816 TRBV5-4A0A0C4DH59 114 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 E7EVH7 732 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 VIPP01282 170 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 MAPK9P45984 424 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 PPM1FP49593 454 aaPredicted RBP22.53■■□□□ 1.2
LSM4-201ENST00000252816 ARSDP51689 593 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 EPHA4P54764 986 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 GPR33Q49SQ1 333 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 BCL7AQ4VC05 210 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 XKR5Q6UX68 686 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 PPP1R21Q6ZMI0 780 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 TMEM26Q6ZUK4 368 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 DPYSL5Q9BPU6 564 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 LDHAL6BQ9BYZ2 381 aaPredicted RBP22.53■■□□□ 1.2
LSM4-201ENST00000252816 UCK1Q9HA47 277 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 CASS4Q9NQ75 786 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 PDP2Q9P2J9 529 aa22.53■■□□□ 1.2
LSM4-201ENST00000252816 LILRA5A6NI73 299 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 APRTP07741 180 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 SLC5A2P31639 672 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 TLE3Q04726 772 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 TRA2AQ13595 282 aaKnown RBP eCLIP22.52■■□□□ 1.2
LSM4-201ENST00000252816 ZRANB3Q5FWF4 1079 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 WDR74Q6RFH5 385 aaPredicted RBP22.52■■□□□ 1.2
LSM4-201ENST00000252816 TRIM48Q8IWZ4 208 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 PIANPQ8IYJ0 282 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 NCSTNQ92542 709 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 DCUN1D1Q96GG9 259 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 MS4A14Q96JA4 679 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 COPS8Q99627 209 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 ZMYND15Q9H091 742 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 SLC40A1Q9NP59 571 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 OGFRQ9NZT2 677 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 PCDHGA7Q9Y5G6 932 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 PTPRQQ9UMZ3 2332 aa22.52■■□□□ 1.2
LSM4-201ENST00000252816 IGLV3-16A0A075B6K0 115 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 MGAT4DA6NG13 374 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 HGSO14964 777 aaPredicted RBP22.51■■□□□ 1.19
LSM4-201ENST00000252816 CCL4P13236 92 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 ACRV1P26436 265 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 METRNLQ641Q3 311 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 GSTA5Q7RTV2 222 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 SERPINA9Q86WD7 417 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 JAMLQ86YT9 394 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 SLC35F6Q8N357 371 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 RASGEF1CQ8N431 466 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 OR2L2Q8NH16 312 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 KCNE4Q8WWG9 221 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 POT1Q9NUX5 634 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 TRMT1Q9NXH9 659 aaKnown RBP22.51■■□□□ 1.19
LSM4-201ENST00000252816 ZDHHC3Q9NYG2 299 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 PSMD13Q9UNM6 376 aa22.51■■□□□ 1.19
LSM4-201ENST00000252816 OR51F1A6NGY5 319 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 RALBP11234 206 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 ATP1B2P14415 290 aaPredicted RBP22.5■■□□□ 1.19
LSM4-201ENST00000252816 PRLHRP49683 370 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 MAPK10P53779 464 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 CACNG1Q06432 222 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 RPE65Q16518 533 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 SKIDA1Q1XH10 827 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 SNAP47Q5SQN1 464 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 TAS2R42Q7RTR8 314 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 OR13J1Q8NGT2 312 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 HEXDCQ8WVB3 486 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 USP7Q93009 1102 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 CXorf40BQ96DE9 158 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 LINC00615Q96LM1 132 aaPredicted RBP22.5■■□□□ 1.19
LSM4-201ENST00000252816 ZNF778Q96MU6 729 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 HOMER3Q9NSC5 361 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 AKAP7Q9P0M2 348 aaPredicted RBP22.5■■□□□ 1.19
LSM4-201ENST00000252816 FAM8A1Q9UBU6 413 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 SLC2A6Q9UGQ3 507 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 AHCTF1Q8WYP5 2266 aa22.5■■□□□ 1.19
LSM4-201ENST00000252816 HEATR9A2RTY3 570 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 CCDC162PA2VCL2 907 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 CFAP99D6REC4 459 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 NVLO15381 856 aaKnown RBP22.49■■□□□ 1.19
LSM4-201ENST00000252816 ZSCAN12O43309 604 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 GAS8O95995 478 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 FGF3P11487 239 aaPredicted RBP22.49■■□□□ 1.19
LSM4-201ENST00000252816 TYRP1P17643 537 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 MSNP26038 577 aaKnown RBP22.49■■□□□ 1.19
LSM4-201ENST00000252816 HALP42357 657 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 GPR18Q14330 331 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 DBN1Q16643 649 aa22.49■■□□□ 1.19
LSM4-201ENST00000252816 PDZD3Q86UT5 571 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms