RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 WFS1O76024 890 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 CFHP08603 1231 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 NRLP54845 237 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 OCA2Q04671 838 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 MAPKAPK3Q16644 382 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ATXN7L2Q5T6C5 722 aaPredicted RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 ZNF765Q7L2R6 523 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 PIH1D1Q9NWS0 290 aaKnown RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 TMEM265A0A087WTH1 108 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 GSAPA4D1B5 854 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 SLC22A3O75751 556 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 GDF10P55107 478 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 HERVK_113P63132 956 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 TOP3AQ13472 1001 aaPredicted RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 LRRC26Q2I0M4 334 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 C10orf107Q8IVU9 208 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 DCUN1D3Q8IWE4 304 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 C19orf60Q96EN9 201 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ERVK-6Q9BXR3 956 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 C2orf71A6NGG8 1288 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 SPIN4Q56A73 249 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ZC3H12BQ5HYM0 836 aaKnown RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 NR4A3Q92570 626 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ART5Q96L15 291 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 AGAP2Q99490 1192 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 C19orf43Q9BQ61 176 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 MAFKO60675 156 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 TMEM63AO94886 807 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 COX4I1P13073 169 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 HSD3B1P14060 373 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 HSD3B2P26439 372 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ACVRL1P37023 503 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 CCR8P51685 355 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 ELOCQ15369 112 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 TRIM71Q2Q1W2 868 aaKnown RBP13.49□□□□□ -0.25
LDLR-201ENST00000252444 SNX10Q9Y5X0 201 aa13.49□□□□□ -0.25
LDLR-201ENST00000252444 A0A0J9YYE9 177 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 MYO1GB0I1T2 1018 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 FSBPO95073 299 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 MT-CYBP00156 380 aaPredicted RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 TRBC1P01850 177 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 IL6P05231 212 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 SHMT2P34897 504 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 LEPRP48357 1165 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 C14orf80Q86SX3 495 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 P3H2Q8IVL5 708 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 RFWD2Q8NHY2 731 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 RHEBL1Q8TAI7 183 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 TMEM209Q96SK2 561 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 IMP3Q9NV31 184 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 FBXL12Q9NXK8 326 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 LTBP1Q14766 1721 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 FAM189A1O60320 539 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 KAT7O95251 611 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 PENKP01210 267 aaPredicted RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 FYNP06241 537 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 DRD4P21917 467 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 ATP4BP51164 291 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 ATXN1P54253 815 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 NEK5Q6P3R8 708 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 MBOAT1Q6ZNC8 495 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 NXPE1Q8N323 547 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 GPR150Q8NGU9 434 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 DNASE1L2Q92874 299 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 PITHD1Q9GZP4 211 aaPredicted RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 TRPC4Q9UBN4 977 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 INVSQ9Y283 1065 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 TFE3P19532 575 aaPredicted RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 GTF2E2P29084 291 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 ALDH9A1P49189 494 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 SEC13P55735 322 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 SLC18A2Q05940 514 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 SEMA3AQ14563 771 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 LHX8Q68G74 356 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 UNC5DQ6UXZ4 953 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 ABHD13Q7L211 337 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 ULK2Q8IYT8 1036 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 CRISPLD2Q9H0B8 497 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 SRMSQ9H3Y6 488 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 DKK3Q9UBP4 350 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 ITM2BQ9Y287 266 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 LOC100653049A0A140TA62 436 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 KRT34O76011 436 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 OAS1P00973 400 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 CA3P07451 260 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 GUCA1AP43080 201 aaPredicted RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 PSMD4P55036 377 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 TNK2Q07912 1038 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 SMU1Q2TAY7 513 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 TMEM26Q6ZUK4 368 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 NEK10Q6ZWH5 1172 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 TDRD1Q9BXT4 1180 aaKnown RBP13.48□□□□□ -0.25
LDLR-201ENST00000252444 NDOR1Q9UHB4 597 aa13.48□□□□□ -0.25
LDLR-201ENST00000252444 IRGMA1A4Y4 181 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 LDLRP01130 860 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 UMPSP11172 480 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 GLULP15104 373 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 MCCD1P59942 119 aaPredicted RBP13.47□□□□□ -0.25
LDLR-201ENST00000252444 HEPACAMQ14CZ8 416 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 VPS26BQ4G0F5 336 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms