RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 C8GP07360 202 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ETS2P15036 469 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 CMPK1P30085 196 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 STARP49675 285 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 HEPACAMQ14CZ8 416 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 REP15Q6BDI9 236 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 LINGO4Q6UY18 593 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 UNC5BQ8IZJ1 945 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 C1QTNF1Q9BXJ1 281 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SHOX2O60902 331 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PSIP1O75475 530 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 GOT2P00505 430 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 TFPIP10646 304 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ARFIP1P53367 373 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 MYBPC3Q14896 1274 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 GALNT5Q7Z7M9 940 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 RBM23Q86U06 439 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SERPINA9Q86WD7 417 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 FSTL5Q8N475 847 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 MEIOBQ8N635 442 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 TRPV1Q8NER1 839 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 DNASE1L2Q92874 299 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 CDADC1Q9BWV3 514 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 DSN1Q9H410 356 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 INTS10Q9NVR2 710 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SALL4Q9UJQ4 1053 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 IKZF2Q9UKS7 526 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 RIMS1Q86UR5 1692 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 C2orf71A6NGG8 1288 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SLC22A2O15244 555 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PMM2O15305 246 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ZBTB48P10074 688 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 NSG1P42857 185 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PTGIRP43119 386 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ILF3Q12906 894 aaKnown RBP eCLIP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 VWA5B1Q5TIE3 1220 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SVOPLQ8N434 492 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 CBR4Q8N4T8 237 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PDPRQ8NCN5 879 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 HMCESQ96FZ2 354 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 FUBP3Q96I24 572 aaKnown RBP eCLIP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 TPK1Q9H3S4 243 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SLC35C2Q9NQQ7 365 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 GPN3Q9UHW5 284 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 OAS3Q9Y6K5 1087 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ZFP37Q9Y6Q3 630 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PTPRJQ12913 1337 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SAGE2PA6NJ88 616 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 RNASEH2AO75792 299 aaKnown RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 MT-CYBP00156 380 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 NMBRP28336 390 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SDC2P34741 201 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PRR5P85299 388 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ZBTB46Q86UZ6 589 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 JAZF1Q86VZ6 243 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 ATCAYQ86WG3 371 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SAMD14Q8IZD0 417 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PARP8Q8N3A8 854 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 UBR7Q8N806 425 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 DNAJB8Q8NHS0 232 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 PCDH19Q8TAB3 1148 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 SLC9A6Q92581 669 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 HEPHQ9BQS7 1158 aa13.42□□□□□ -0.26
SF3A1-201ENST00000215793 DENND2DQ9H6A0 471 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-201ENST00000215793 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 GIMD1P0DJR0 217 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 RPS6KA3P51812 740 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 SRSF11Q05519 484 aaKnown RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 LIN52Q52LA3 116 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 PSRC1Q6PGN9 363 aaPredicted RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 NPAS4Q8IUM7 802 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 REM2Q8IYK8 340 aaPredicted RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 GPR65Q8IYL9 337 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 CFAP206Q8IYR0 622 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 PYROXD2Q8N2H3 581 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 ZNF781Q8N8C0 355 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 PJA1Q8NG27 643 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 RFKQ969G6 155 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 EXOSC8Q96B26 276 aaKnown RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 PCBD2Q9H0N5 130 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 MAP10Q9P2G4 905 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 FZD10Q9ULW2 581 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 AGRPO00253 132 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 GABRDO14764 452 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 SLC30A4O14863 429 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 TRMUO75648 421 aaKnown RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 SLC35G6P0C7Q6 338 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 COL6A1P12109 1028 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 KCNA10Q16322 511 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 DPY19L1Q2PZI1 675 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 ATXN7L2Q5T6C5 722 aaPredicted RBP13.41□□□□□ -0.26
SF3A1-201ENST00000215793 FAM91A1Q658Y4 838 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 ABCG4Q9H172 646 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 IL1RAPQ9NPH3 570 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 C1orf109Q9NX04 203 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 MAP4K5Q9Y4K4 846 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 MYBPHLA2RUH7 354 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 ARL5CA6NH57 179 aa13.41□□□□□ -0.26
SF3A1-201ENST00000215793 OR2AG2A6NM03 316 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms