RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SIX2Q9NPC8 291 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 TAS2R10Q9NYW0 307 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 PAK5Q9P286 719 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 PDP2Q9P2J9 529 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 B3GALT5Q9Y2C3 310 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 MRPS28Q9Y2Q9 187 aaKnown RBP3.74□□□□□ -1.81
CD44-239ENST00000639002 ZFAND5O76080 213 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 GCNT3O95395 438 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 MMP15P51511 669 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 RARSP54136 660 aaKnown RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 RPL7AP62424 266 aaKnown RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 MRPS34P82930 218 aaKnown RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 CSTF3Q12996 717 aaKnown RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 DHX8Q14562 1220 aaKnown RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 DPCR1Q3MIW9 517 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 ZNF790Q6PG37 636 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 TSPAN33Q86UF1 283 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 ZNF354CQ86Y25 554 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 TMEM116Q8NCL8 245 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 DDHD1Q8NEL9 900 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 MYRIPQ8NFW9 859 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 LINC00479Q96M42 142 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 SEPT5Q99719 369 aaPredicted RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 OPRPNQ99935 248 aaPredicted RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 ZNF71Q9NQZ8 489 aaPredicted RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 MBNL1Q9NR56 388 aaKnown RBP3.73□□□□□ -1.81
CD44-239ENST00000639002 SLC38A7Q9NVC3 462 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 KCNJ14Q9UNX9 436 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 CRYL1Q9Y2S2 319 aa3.73□□□□□ -1.81
CD44-239ENST00000639002 KANSL1LA0AUZ9 987 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 OR2M5A3KFT3 312 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 PLOD2O00469 737 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 TCERG1O14776 1098 aaKnown RBP3.72□□□□□ -1.81
CD44-239ENST00000639002 ZNF217O75362 1048 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 LIFP15018 202 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 XBP1P17861 261 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 GNAZP19086 355 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 PPM1FP49593 454 aaPredicted RBP3.72□□□□□ -1.81
CD44-239ENST00000639002 CTSCP53634 463 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 TAS2R40P59535 323 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 CD81P60033 236 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 TUBB2AQ13885 445 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 CYP20A1Q6UW02 462 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 PTOV1Q86YD1 416 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 PAF1Q8N7H5 531 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 TSPYL6Q8N831 410 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 FAM149B1Q96BN6 582 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 ZNF689Q96CS4 500 aaPredicted RBP3.72□□□□□ -1.81
CD44-239ENST00000639002 TUBB2BQ9BVA1 445 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 TMEM39BQ9GZU3 492 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 ZDHHC18Q9NUE0 388 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 CWC15Q9P013 229 aaKnown RBP3.72□□□□□ -1.81
CD44-239ENST00000639002 YIPF1Q9Y548 306 aa3.72□□□□□ -1.81
CD44-239ENST00000639002 A6NLC8 198 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 SLC25A12O75746 678 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 SORBS2O94875 1100 aaKnown RBP3.71□□□□□ -1.82
CD44-239ENST00000639002 BMP10O95393 424 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 FRMD6-AS1P0C7T7 363 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 KRTAP5-9P26371 169 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 ACADLP28330 430 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 EPHA2P29317 976 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 HOXA13P31271 388 aaPredicted RBP3.71□□□□□ -1.82
CD44-239ENST00000639002 KRT9P35527 623 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 DSCR10P59022 87 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 ZBED6P86452 979 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 ADIPOQQ15848 244 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 FFAR4Q5NUL3 377 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 ADAMTSL4-AS1Q5T5F5 129 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 NDUFAF5Q5TEU4 345 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 SH2D5Q6ZV89 423 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 R3HCC1LQ7Z5L2 792 aaKnown RBP3.71□□□□□ -1.82
CD44-239ENST00000639002 CEP97Q8IW35 865 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 C1orf52Q8N6N3 182 aaKnown RBP3.71□□□□□ -1.82
CD44-239ENST00000639002 OR8K5Q8NH50 307 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 SMPDL3BQ92485 455 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 EPB41L5Q9HCM4 733 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 BARHL2Q9NY43 387 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 OGFRQ9NZT2 677 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 RCC2Q9P258 522 aaKnown RBP3.71□□□□□ -1.82
CD44-239ENST00000639002 FBXW11Q9UKB1 542 aa3.71□□□□□ -1.82
CD44-239ENST00000639002 STK36Q9NRP7 1315 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 MEIOCA2RUB1 952 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 SH2B2O14492 632 aaPredicted RBP3.7□□□□□ -1.82
CD44-239ENST00000639002 CLIC2O15247 247 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 ARHGEF9O43307 516 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 DAB1O75553 588 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 NGFP01138 241 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 THOP1P52888 689 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 BHLHB9Q6PI77 547 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 ZNF534Q76KX8 674 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 RNF168Q8IYW5 571 aaPredicted RBP3.7□□□□□ -1.82
CD44-239ENST00000639002 CPXCR1Q8N123 301 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 OR2T12Q8NG77 320 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 KCNG4Q8TDN1 519 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 DCTN5Q9BTE1 182 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 SEMA6AQ9H2E6 1030 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 PREBQ9HCU5 417 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 INTS10Q9NVR2 710 aaKnown RBP3.7□□□□□ -1.82
CD44-239ENST00000639002 ASIC3Q9UHC3 531 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 TSPYL4Q9UJ04 414 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms