RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MGME1Q9BQP7 344 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 SELENOOQ9BVL4 669 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 OR2AG1Q9H205 316 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 PCM1Q15154 2024 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 ACANP16112 2415 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 BIN1O00499 593 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 IPO13O94829 963 aaKnown RBP14.22□□□□□ -0.13
CLN3-249ENST00000636685 CLDN7O95471 211 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 FGFR1OPO95684 399 aaKnown RBP14.22□□□□□ -0.13
CLN3-249ENST00000636685 PEX11BO96011 259 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 ZNF30P17039 623 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 ERCC2P18074 760 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 SSTR2P30874 369 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 AIF1P55008 147 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 DRG2P55039 364 aaKnown RBP14.22□□□□□ -0.13
CLN3-249ENST00000636685 HSD11B2P80365 405 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 ABRQ12979 859 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 NCF4Q15080 339 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 INSCQ1MX18 579 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 PTCHD3Q3KNS1 767 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 DCAF10Q5QP82 559 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 MRGPRGQ86SM5 289 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 KMT5CQ86Y97 462 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 SYTL1Q8IYJ3 562 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 CPT1BQ92523 772 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 CXorf40BQ96DE9 158 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 CLIP3Q96DZ5 547 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 FER1L6-AS2Q96M78 137 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 ZNF599Q96NL3 588 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 PCMTD2Q9NV79 361 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 TRIM10Q9UDY6 481 aa14.22□□□□□ -0.13
CLN3-249ENST00000636685 A0A0J9YYE9 177 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 DAPK3O43293 454 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 FZD6O60353 706 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 MTA2O94776 668 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 LCA5LO95447 670 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 TRBC1P01850 177 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 CHRNB2P17787 502 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 CAPN3P20807 821 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 HSPA9P38646 679 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 TSFMP43897 325 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 ZNF143P52747 638 aaPredicted RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 KCNK10P57789 538 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 FMO1Q01740 532 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 DNTTIP2Q5QJE6 756 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 HENMT1Q5T8I9 393 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 DUS1LQ6P1R4 473 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 ABRAXAS1Q6UWZ7 409 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 TRIM72Q6ZMU5 477 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 RBM12BQ8IXT5 1001 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 OR8K5Q8NH50 307 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 CCDC120Q96HB5 630 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 SLX1AQ9BQ83 275 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 VPS16Q9H269 839 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 DHX35Q9H5Z1 703 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 DTLQ9NZJ0 730 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 HOOK1Q9UJC3 728 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 NOCTQ9UK39 431 aaKnown RBP14.21□□□□□ -0.13
CLN3-249ENST00000636685 AP4E1Q9UPM8 1137 aa14.21□□□□□ -0.13
CLN3-249ENST00000636685 NUP210LQ5VU65 1888 aa14.21□□□□□ -0.14
CLN3-249ENST00000636685 A0A1W2PQJ5 194 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 UBA6A0AVT1 1052 aaPredicted RBP14.2□□□□□ -0.14
CLN3-249ENST00000636685 TLCD2A6NGC4 264 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 LDB2O43679 373 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 KLHL41O60662 606 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 JRKO75564 520 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 ZNF7P17097 686 aaPredicted RBP14.2□□□□□ -0.14
CLN3-249ENST00000636685 IL4RP24394 825 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 CDC16Q13042 620 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 FBXO38Q6PIJ6 1188 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 RFX8Q6ZV50 586 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 NDUFAF2Q8N183 169 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 ZNF808Q8N4W9 903 aaPredicted RBP14.2□□□□□ -0.14
CLN3-249ENST00000636685 GPR150Q8NGU9 434 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 KCTD15Q96SI1 283 aaPredicted RBP14.2□□□□□ -0.14
CLN3-249ENST00000636685 NAA15Q9BXJ9 866 aaKnown RBP14.2□□□□□ -0.14
CLN3-249ENST00000636685 FAM83DQ9H4H8 585 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 ADAM22Q9P0K1 906 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 SUCOQ9UBS9 1254 aaKnown RBP14.2□□□□□ -0.14
CLN3-249ENST00000636685 WDR37Q9Y2I8 494 aa14.2□□□□□ -0.14
CLN3-249ENST00000636685 SIGLEC16A6NMB1 481 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 C19orf84I3L1E1 186 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 KCNN4O15554 427 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 KLF7O75840 302 aaPredicted RBP14.19□□□□□ -0.14
CLN3-249ENST00000636685 FECHP22830 423 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 MTIF2P46199 727 aaKnown RBP14.19□□□□□ -0.14
CLN3-249ENST00000636685 SPINT3P49223 89 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 EPHB1P54762 984 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 RPL7AP62424 266 aaKnown RBP14.19□□□□□ -0.14
CLN3-249ENST00000636685 CDR2Q01850 454 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 KLHDC7AQ5VTJ3 777 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 ADGRG6Q86SQ4 1221 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 C3orf20Q8ND61 904 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 DNAJB14Q8TBM8 379 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 PPP4R1Q8TF05 950 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 PPM1MQ96MI6 270 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 IP6K3Q96PC2 410 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 MCEEQ96PE7 176 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 PCDHB18PQ96TA0 734 aa14.19□□□□□ -0.14
CLN3-249ENST00000636685 TLR10Q9BXR5 811 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms