RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 UGT1A6P19224 532 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ITGALP20701 1170 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 UGT1A1P22309 533 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 UGT1A4P22310 534 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 UGT1A3P35503 534 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 UGT1A5P35504 534 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 GLRBP48167 497 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 KPNA2P52292 529 aaKnown RBP9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ADARP55265 1226 aaKnown RBP9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 SEC13P55735 322 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 BST1Q10588 318 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 SF3A3Q12874 501 aaKnown RBP eCLIP9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 E2F5Q15329 346 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 CHRNA6Q15825 494 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ZSCAN26Q16670 478 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 TSNAXIP1Q2TAA8 658 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 GKAP1Q5VSY0 366 aaPredicted RBP9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ZDHHC20Q5W0Z9 365 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 SLC23A3Q6PIS1 610 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 SLC36A4Q6YBV0 504 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 CERS6Q6ZMG9 384 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ZCCHC23Q6ZST2 131 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 HSD11B1LQ7Z5J1 315 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 TTC7BQ86TV6 843 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 NUDCD3Q8IVD9 361 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 C10orf107Q8IVU9 208 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 FSTL5Q8N475 847 aaPredicted RBP9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 GIMAP7Q8NHV1 300 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 HEXDCQ8WVB3 486 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ARRDC3Q96B67 414 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 SEC16BQ96JE7 1060 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 SLC30A3Q99726 388 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ELAC2Q9BQ52 826 aaKnown RBP9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 BOCQ9BWV1 1114 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 TPSD1Q9BZJ3 242 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 NMRAL1Q9HBL8 299 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 GPAMQ9HCL2 828 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 CACNA2D2Q9NY47 1150 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 MID2Q9UJV3 735 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 INVSQ9Y283 1065 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 ITM2BQ9Y287 266 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 STARD13Q9Y3M8 1113 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 NEUROG3Q9Y4Z2 214 aa9.4□□□□□ -0.9
PDLIM5-223ENST00000627587 GOLGA8CPA6NN73 597 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 PLK4O00444 970 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 KPNA3O00505 521 aaPredicted RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 GIPC1O14908 333 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 SNNO75324 88 aaPredicted RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 ZNF37AP17032 561 aaPredicted RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 FMO4P31512 558 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 VIPR1P32241 457 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 MMP12P39900 470 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 PTGER3P43115 390 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 KIR2DL1P43626 348 aaPredicted RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 KCNC1P48547 511 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 SPINT3P49223 89 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 OCRLQ01968 901 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 CHI3L2Q15782 390 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM83EQ2M2I3 478 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 TRIM61Q5EBN2 209 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 ATG16L1Q676U5 607 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 LRRC8EQ6NSJ5 796 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 NAPRTQ6XQN6 538 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 SNX20Q7Z614 316 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 DSG4Q86SJ6 1040 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 IL17RCQ8NAC3 791 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 TXNDC5Q8NBS9 432 aaKnown RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 TMIEQ8NEW7 156 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 RAB3IL1Q8TBN0 382 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM136AQ96C01 138 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 GRAMD1AQ96CP6 724 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 ERLEC1Q96DZ1 483 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 ASB8Q9H765 288 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 PRSS16Q9NQE7 514 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 PKD2L2Q9NZM6 624 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 CPSF2Q9P2I0 782 aaKnown RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 SUN2Q9UH99 717 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 MBD1Q9UIS9 605 aaPredicted RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 ZMIZ1Q9ULJ6 1067 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 SLC6A14Q9UN76 642 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 WASF3Q9UPY6 502 aa9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 RUVBL2Q9Y230 463 aaKnown RBP9.4□□□□□ -0.91
PDLIM5-223ENST00000627587 C1QTNF9BB2RNN3 333 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 H3BMM5 538 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 NIPSNAP2O75323 286 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 KLF8O95600 359 aaPredicted RBP9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 IL1BP01584 269 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 EPHX1P07099 455 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 C1QTNF9P0C862 333 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 CCDC166P0CW27 439 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 HNRNPLP14866 589 aaKnown RBP eCLIP9.39□□□□□ -0.915e-8■■■□□ 14.7
PDLIM5-223ENST00000627587 BCKDHBP21953 392 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 SLC26A3P40879 764 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 B4GALNT1Q00973 533 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 PDAP1Q13442 181 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 CSHL1Q14406 222 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 DUOXA1Q1HG43 343 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 UAP1L1Q3KQV9 507 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 GPR33Q49SQ1 333 aa9.39□□□□□ -0.91
PDLIM5-223ENST00000627587 ATP13A5Q4VNC0 1218 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms