RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 EID2Q8N6I1 236 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 FBXO36Q8NEA4 188 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 CALML6Q8TD86 181 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 GPBAR1Q8TDU6 330 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 RHOXF2Q9BQY4 288 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 SLC32A1Q9H598 525 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 MARCH4Q9P2E8 410 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 GPR34Q9UPC5 381 aa18.85■□□□□ 0.61
SQSTM1-216ENST00000626660 DCHS1Q96JQ0 3298 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 PCNX2A6NKB5 2137 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 GOLGA8KD6RF30 607 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 GOLGA8TH3BQL2 631 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 QSOX1O00391 747 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 NDUFS3O75489 264 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 CELA2BP08218 269 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 ATP1B2P14415 290 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 ZNF7P17097 686 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 ACTR1BP42025 376 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 ACTR1AP61163 376 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 B4GALNT1Q00973 533 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 CUL1Q13616 776 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 SMAD1Q15797 465 aaKnown RBP18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 PLA2G4EQ3MJ16 856 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 LMNTD2Q8IXW0 634 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 LRRN4CLQ8ND94 238 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 GPR150Q8NGU9 434 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 OR4C6Q8NH72 309 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 PYROXD1Q8WU10 500 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 SGF29Q96ES7 293 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 TCF12Q99081 682 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 TIMM29Q9BSF4 260 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 FAM167BQ9BTA0 163 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 ZDHHC18Q9NUE0 388 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 BTBD3Q9Y2F9 522 aa18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 DNMT3AQ9Y6K1 912 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-216ENST00000626660 YY2O15391 372 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 AP2A2O94973 939 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 OGNP20774 298 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 CTSCP53634 463 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 TUBB4BP68371 445 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 SEMA3AQ14563 771 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 FASTKD3Q14CZ7 662 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 BCL7AQ4VC05 210 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 RNF187Q5TA31 235 aaPredicted RBP18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 STEAP4Q687X5 459 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 SLC30A9Q6PML9 568 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 PACS1Q6VY07 963 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 UNC5AQ6ZN44 842 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 PIP4P1Q86T03 277 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 KCNMB4Q86W47 210 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 ZNF547Q8IVP9 402 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 PALM2Q8IXS6 379 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 FAM46DQ8NEK8 389 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 CCL4L1Q8NHW4 92 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 GLMNQ92990 594 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 CDC6Q99741 560 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 RTKNQ9BST9 563 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 BOCQ9BWV1 1114 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 TSPYL1Q9H0U9 437 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 VPS37BQ9H9H4 285 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 KLC4Q9NSK0 619 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 FTSJ1Q9UET6 329 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 VPS9D1Q9Y2B5 631 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 PLEKHM1Q9Y4G2 1056 aa18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 PCYT1BQ9Y5K3 369 aaPredicted RBP18.83■□□□□ 0.6
SQSTM1-216ENST00000626660 KLHL33A6NCF5 533 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 KCNJ13O60928 360 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 SLU7O95391 586 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 AK4P27144 223 aaPredicted RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 ZNF470Q6ECI4 717 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 ZCCHC8Q6NZY4 707 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 LDB1Q86U70 411 aaPredicted RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 AMZ2Q86W34 360 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 NRROSQ86YC3 692 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 CCDC97Q96F63 343 aaPredicted RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 WDR83Q9BRX9 315 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 OSGEPL1Q9H4B0 414 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 PPANQ9NQ55 473 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 EVA1BQ9NVM1 165 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 IL1RAPL1Q9NZN1 696 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 TAAR2Q9P1P5 351 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 PCOLCE2Q9UKZ9 415 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 KCNK6Q9Y257 313 aa18.82■□□□□ 0.6
SQSTM1-216ENST00000626660 TRIM38O00635 465 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 PRMT5O14744 637 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 SIGLEC6O43699 453 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 POP7O75817 140 aaKnown RBP18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 LDOC1O95751 146 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 OR56A5P0C7T3 313 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 CSRP1P21291 193 aaKnown RBP18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 PRLHRP49683 370 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 CLCNKAP51800 687 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 TYSND1Q2T9J0 566 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 HSP90AA5PQ58FG0 334 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 C6orf132Q5T0Z8 1188 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 LRRC6Q86X45 466 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 CILP2Q8IUL8 1156 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 CLDN19Q8N6F1 224 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 DEFB124Q8NES8 71 aa18.81■□□□□ 0.6
SQSTM1-216ENST00000626660 GSDMBQ8TAX9 411 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms