RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 AHSA2Q719I0 299 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 SERPINA9Q86WD7 417 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 FIBCD1Q8N539 461 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 DPF3Q92784 378 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 TEFMQ96QE5 360 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 IMP3Q9NV31 184 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 NKX1-2Q9UD57 310 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 RAPGEFL1Q9UHV5 662 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 SSR3Q9UNL2 185 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 GPSM3Q9Y4H4 160 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 AFDNP55196 1824 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 RGS10O43665 173 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 TBX18O95935 607 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 ANXA4P09525 319 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 HOXB6P17509 224 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CTNNB1P35222 781 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 PPM1AP35813 382 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 OLR1P78380 273 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 GTF2H2Q13888 395 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 KCNA10Q16322 511 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 GTF2H2CQ6P1K8 395 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 DLK2Q6UY11 383 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 COMMD2Q86X83 199 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 PIK3C3Q8NEB9 887 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 ST13P5Q8NFI4 369 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 OR13C4Q8NGS5 318 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 VANGL1Q8TAA9 524 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 RSPH9Q9H1X1 276 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 MFHAS1Q9Y4C4 1052 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 KNL1Q8NG31 2342 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 KNDC1Q76NI1 1749 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 COL1A1P02452 1464 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CCDC162PA2VCL2 907 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 FPGTO14772 594 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 EFNA1P20827 205 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 MTPNP58546 118 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 FAM83DQ9H4H8 585 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 TIMMDC1Q9NPL8 285 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 INTS7Q9NVH2 962 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 SEC14L3Q9UDX4 400 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CARNS1A5YM72 827 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 TP73O15350 636 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 CXCL14O95715 111 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 SEPHS1P49903 392 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 CDH4P55283 916 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 ERICH5Q6P6B1 374 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 C6orf89Q6UWU4 347 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 CHSY3Q70JA7 882 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 SIDT2Q8NBJ9 832 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 DDX1Q92499 740 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 C1GALT1C1Q96EU7 318 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 NODALQ96S42 347 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 WDR12Q9GZL7 423 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 FCF1Q9Y324 198 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 OR10H1Q9Y4A9 318 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 STX16-NPEPL1H3BU86 382 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 PSMD11O00231 422 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 UGT2B11O75310 529 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 TOP3BO95985 862 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 IFNA16P05015 189 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 NUP62P37198 522 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 PTGER3P43115 390 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 ZNF280AP59817 542 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 ZNHIT3Q15649 155 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 KLHL12Q53G59 568 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 PYDC2Q56P42 97 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 MZT2AQ6P582 158 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 PAQR3Q6TCH7 311 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 OLFML1Q6UWY5 402 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 FRMD7Q6ZUT3 714 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 HFE2Q6ZVN8 426 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 ANKRD23Q86SG2 305 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 TCAIMQ8N3R3 496 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 C11orf65Q8NCR3 313 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 LMO3Q8TAP4 145 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 COQ7Q99807 217 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 UBAP1Q9NZ09 502 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 RPL17P18621 184 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 RPL4P36578 427 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 ASMTP46597 345 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 RPS24P62847 133 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 SLC10A7Q0GE19 358 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 C2orf80Q0P641 193 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 MPPE1Q53F39 396 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 C9orf64Q5T6V5 341 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 TEX47Q8TBZ9 253 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 SPACA7Q96KW9 195 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 RPL10LQ96L21 214 aaKnown RBP13.87□□□□□ -0.19
CPSF1-212ENST00000616140 HIPK3Q9H422 1215 aa13.87□□□□□ -0.19
CPSF1-212ENST00000616140 CCDC182A6NF36 153 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 TMEM233B4DJY2 109 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 OR10H2O60403 315 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CCNYL3P0C7X3 344 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 OLIG2Q13516 323 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 MPP2Q14168 576 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 GALNT18Q6P9A2 607 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SLC35F5Q8WV83 523 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CANT1Q8WVQ1 401 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 HTRA1Q92743 480 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms