RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IQCF5A8MTL0 148 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 NDUFS2O75306 463 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 RAP2AP10114 183 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 HLA-DPA1P20036 260 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 PRDX3P30048 256 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 CD52P31358 61 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ACVRL1P37023 503 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 OTUD1Q5VV17 481 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 NCCRP1Q6ZVX7 275 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 HID1Q8IV36 788 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ISL2Q96A47 359 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 RBM38Q9H0Z9 239 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 MFSD1Q9H3U5 465 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ELOVL6Q9H5J4 265 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 UBA2Q9UBT2 640 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 BCKDKO14874 412 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 RAD51BO15315 384 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ULK1O75385 1050 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 NTRK1P04629 796 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 RHOCP08134 193 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 G6PDP11413 515 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 KCNE1P15382 129 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 CTPS1P17812 591 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 POU1F1P28069 291 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ARCN1P48444 511 aaKnown RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 SCAPQ12770 1279 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ZNF177Q13360 481 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 ZBTB6Q15916 424 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ALFQ53S48 1182 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 RSBN1Q5VWQ0 802 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 UGT3A1Q6NUS8 523 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ARL10Q8N8L6 244 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ZNF420Q8TAQ5 688 aaPredicted RBP12.47□□□□□ -0.41
LIG1-221ENST00000613670 GPR78Q96P69 363 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 BBS2Q9BXC9 721 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 SEZ6LQ9BYH1 1024 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 ADAMTS10Q9H324 1103 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 NMRK2Q9NPI5 230 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 TBCCD1Q9NVR7 557 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 MAP10Q9P2G4 905 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 OPTCQ9UBM4 332 aa12.47□□□□□ -0.41
LIG1-221ENST00000613670 TLR5O60602 858 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 CD1DP15813 335 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 CD247P20963 164 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 ERVK-8P63133 956 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 TRAF3Q13114 568 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 CRY1Q16526 586 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 LRRC49Q8IUZ0 686 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 MINDY1Q8N5J2 469 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 MCFD2Q8NI22 146 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 PNPT1Q8TCS8 783 aaKnown RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 CDKN2AIPNLQ96HQ2 116 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 CGREF1Q99674 301 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 MAF1Q9H063 256 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 IPPKQ9H8X2 491 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 AGPAT4Q9NRZ5 378 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 IMPAD1Q9NX62 359 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 DUS2Q9NX74 493 aaKnown RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 SMPD4Q9NXE4 827 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 SCHIP1Q9P0W5 487 aaPredicted RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 KIAA1217Q5T5P2 1943 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 ELOVL7A1L3X0 281 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 I6L893 689 aaPredicted RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 RGS14O43566 566 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 DIRAS1O95057 198 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 HIST1H2AGP0C0S8 130 aaPredicted RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 HIST1H2ADP20671 130 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 MAGEA10P43363 369 aaPredicted RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 EEFSECP57772 596 aaKnown RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 EPS8Q12929 822 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 SPOUT1Q5T280 376 aaKnown RBP12.46□□□□□ -0.41
LIG1-221ENST00000613670 BLOC1S3Q6QNY0 202 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 SETD9Q8NE22 299 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 OR6K2Q8NGY2 324 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 SPPL2AQ8TCT8 520 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 HIST1H2AHQ96KK5 128 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 IL12RB2Q99665 862 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 HIST1H2AJQ99878 128 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 H2AFJQ9BTM1 129 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 LHPPQ9H008 270 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 FKBPLQ9UIM3 349 aa12.46□□□□□ -0.41
LIG1-221ENST00000613670 H0Y858 1186 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 PTGESO14684 152 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 PORP16435 677 aaPredicted RBP12.46□□□□□ -0.42
LIG1-221ENST00000613670 EFNA1P20827 205 aaPredicted RBP12.46□□□□□ -0.42
LIG1-221ENST00000613670 AQP1P29972 269 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 HLCSP50747 726 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 MLLT6P55198 1093 aaPredicted RBP12.46□□□□□ -0.42
LIG1-221ENST00000613670 KCNAB2Q13303 367 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 PLA2G4EQ3MJ16 856 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 KIAA0319Q5VV43 1072 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 AHSA2Q719I0 299 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 LYSMD3Q7Z3D4 306 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 OR8H2Q8N162 312 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 SLC30A3Q99726 388 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 TM6SF2Q9BZW4 377 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 MTRRQ9UBK8 725 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 SNX8Q9Y5X2 465 aa12.46□□□□□ -0.42
LIG1-221ENST00000613670 RECQL5O94762 991 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms