RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	DUSP12	Q9UNI6	340 aa		11.59	□□□□□ -0.55
VRK3-223	ENST00000601341	ANKRD36	A6QL64	1941 aa		11.58	□□□□□ -0.55
VRK3-223	ENST00000601341	MUC22	E2RYF6	1773 aa	Predicted RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	MAGEA13P	A6NCF6	341 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	OR51F1	A6NGY5	319 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	TRPC5OS	A6NMA1	111 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	SBK3	P0C264	359 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	CHRM1	P11229	460 aa	Predicted RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	TFEB	P19484	476 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	NCF2	P19878	526 aa	Predicted RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	ITGAX	P20702	1163 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	OGN	P20774	298 aa	Known RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	LHCGR	P22888	699 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	MC4R	P32245	332 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	PPARG	P37231	505 aa	Predicted RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	LEPR	P48357	1165 aa	Known RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	CD151	P48509	253 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	CLCN2	P51788	898 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	CLCN5	P51795	746 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	SESN3	P58005	492 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	IRF9	Q00978	393 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	SEMG2	Q02383	582 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	PTS	Q03393	145 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	ZP2	Q05996	745 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	LRRC73	Q5JTD7	316 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	LRRC8E	Q6NSJ5	796 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	ERN2	Q76MJ5	926 aa	Known RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	DPPA4	Q7L190	304 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	FSTL5	Q8N475	847 aa	Predicted RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	TSPAN17	Q96FV3	270 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	GPR78	Q96P69	363 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	TCF12	Q99081	682 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	ZNF385D	Q9H6B1	395 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	CAB39L	Q9H9S4	337 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	PRDM6	Q9NQX0	595 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	SLC30A1	Q9Y6M5	507 aa		11.58	□□□□□ -0.56
VRK3-223	ENST00000601341	FAM95C	A0A1B0GW59	222 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	CASQ2	O14958	399 aa	Predicted RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	PFDN6	O15212	129 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	DCX	O43602	365 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	PEX1	O43933	1283 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	KLF8	O95600	359 aa	Predicted RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	S1PR4	O95977	384 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	ADH1B	P00325	375 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	BPI	P17213	487 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	GABRB3	P28472	473 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	PML	P29590	882 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	MMP12	P39900	470 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	PSMD8	P48556	350 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	MPP1	Q00013	466 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	SLC25A3	Q00325	362 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	ELP6	Q0PNE2	266 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	PEX6	Q13608	980 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	CCIN	Q13939	588 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	MLF2	Q15773	248 aa	Predicted RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	CST6	Q15828	149 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	AARS2	Q5JTZ9	985 aa	Known RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	ZNF852	Q6ZMS4	543 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	DHDDS	Q86SQ9	333 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	AFAP1L2	Q8N4X5	818 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	TXNDC5	Q8NBS9	432 aa	Known RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	OR2T3	Q8NH03	318 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	DTX3L	Q8TDB6	740 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	GATA6	Q92908	595 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	RAB7B	Q96AH8	199 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	ARRDC3	Q96B67	414 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	ATXN7L3B	Q96GX2	97 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	MAEL	Q96JY0	434 aa	Known RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	HDAC8	Q9BY41	377 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	IL26	Q9NPH9	171 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	PKD2L2	Q9NZM6	624 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	SCOC	Q9UIL1	159 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	RUVBL2	Q9Y230	463 aa	Known RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	VPS9D1	Q9Y2B5	631 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	COL4A2	P08572	1712 aa		11.57	□□□□□ -0.56
VRK3-223	ENST00000601341	GLYATL1P3	A0A0U1RQE8	302 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	SHISA7	A6NL88	538 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	ZBTB14	O43829	449 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	ADAM23	O75077	832 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	SRP72	O76094	671 aa	Known RBP	11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	RBP1	P09455	135 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	ADRB3	P13945	408 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	HOXB2	P14652	356 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	C5AR1	P21730	350 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	CD72	P21854	359 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	ATP5F1	P24539	256 aa	Predicted RBP	11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	SPAM1	P38567	509 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	TTPA	P49638	278 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	STC1	P52823	247 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	METAP1	P53582	386 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	PRKCQ	Q04759	706 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	CACNG1	Q06432	222 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	FAM83E	Q2M2I3	478 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	TYSND1	Q2T9J0	566 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	SLC9B1	Q4ZJI4	515 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	ZRANB3	Q5FWF4	1079 aa		11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	ARL13A	Q5H913	290 aa	Predicted RBP	11.56	□□□□□ -0.56
VRK3-223	ENST00000601341	EOGT	Q5NDL2	527 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms