RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SERTAD3Q9UJW9 196 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 LRRC10BA6NIK2 292 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 LRIG2O94898 1065 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 TGDSO95455 350 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 FIP1L1Q6UN15 594 aaKnown RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 CADM2Q8N3J6 435 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 HDAC7Q8WUI4 952 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 CCM2Q9BSQ5 444 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 GNEQ9Y223 722 aaKnown RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 OR2AG2A6NM03 316 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 DPP6P42658 865 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ZSWIM7Q19AV6 140 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 GDF6Q6KF10 455 aaPredicted RBP20.27■□□□□ 0.84
UPF1-207ENST00000599848 MIEF2Q96C03 454 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 TNKS2Q9H2K2 1166 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ZNF208O43345 1280 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 SNHG28P0DPA3 235 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 CD247P20963 164 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 PPP3R1P63098 170 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ARSJQ5FYB0 599 aaPredicted RBP20.27■□□□□ 0.84
UPF1-207ENST00000599848 KLHL17Q6TDP4 642 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 PPP1R13LQ8WUF5 828 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ATXN10Q9UBB4 475 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 PCDHGB1Q9Y5G3 927 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ANXA4P09525 319 aaPredicted RBP20.27■□□□□ 0.84
UPF1-207ENST00000599848 ZNF30P17039 623 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 MBLAC2Q68D91 279 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 TTC27Q6P3X3 843 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 DAW1Q8N136 415 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 PIGXQ8TBF5 258 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ZBED6CLQ96FA7 236 aaPredicted RBP20.27■□□□□ 0.84
UPF1-207ENST00000599848 CRISPLD1Q9H336 500 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 SLC35C2Q9NQQ7 365 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 ABCB8Q9NUT2 735 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 SSR3Q9UNL2 185 aa20.27■□□□□ 0.84
UPF1-207ENST00000599848 POLR3HQ9Y535 204 aaPredicted RBP20.27■□□□□ 0.84
UPF1-207ENST00000599848 COQ9O75208 318 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 TRIM3O75382 744 aaPredicted RBP20.27■□□□□ 0.83
UPF1-207ENST00000599848 ADSSP30520 456 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 TIE1P35590 1138 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 DNASE1L1P49184 302 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 FAM189A2Q15884 450 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 RFWD3Q6PCD5 774 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 TMEM156Q8N614 296 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 PJA1Q8NG27 643 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 TLR10Q9BXR5 811 aa20.27■□□□□ 0.83
UPF1-207ENST00000599848 SRPRAP08240 638 aaKnown RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 HNRNPA1P09651 372 aaKnown RBP eCLIP20.26■□□□□ 0.83
UPF1-207ENST00000599848 HOXB2P14652 356 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 MAT2AP31153 395 aaKnown RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 DPY19L1Q2PZI1 675 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 C2orf27AQ580R0 203 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 COX18Q8N8Q8 333 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 XAGE5Q8WWM1 108 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 PCED1BQ96HM7 432 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 QKIQ96PU8 341 aaKnown RBP eCLIP20.26■□□□□ 0.831e-8■□□□□ 10.8
UPF1-207ENST00000599848 TRNT1Q96Q11 434 aaKnown RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 GRIP2Q9C0E4 1043 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 GDF3Q9NR23 364 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 TLR6Q9Y2C9 796 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 FAM221BA6H8Z2 402 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 CYP17A1P05093 508 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 SPATA31C1P0DKV0 1188 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 MMP8P22894 467 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 SCTRP47872 440 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 DHDDSQ86SQ9 333 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 AMIGO1Q86WK6 493 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 APOLD1Q96LR9 279 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 MBOAT7Q96N66 472 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 GOLGA2P5Q9HBQ8 144 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 MRPL42Q9Y6G3 142 aaKnown RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 A0A1W2PQ45 241 aaPredicted RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 A0A1W2PQY0 241 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 NPEPPSL1A6NEC2 478 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 NRP1O14786 923 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 FSCN2O14926 492 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 PDE5AO76074 875 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 CTBP1Q13363 440 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 MAPK14Q16539 360 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 ZNF311Q5JNZ3 666 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 DNM1P34Q6PK57 102 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 GDPD4Q6W3E5 623 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 RINLQ6ZS11 566 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 THAP5Q7Z6K1 395 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 FBXO15Q8NCQ5 510 aaPredicted RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 SUSD3Q96L08 255 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 PDCD10Q9BUL8 212 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 PCDH10Q9P2E7 1040 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 ATXN2Q99700 1313 aaKnown RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 ZNF726A6NNF4 738 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 SYPP08247 313 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 CLUP10909 449 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 FGFR3P22607 806 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 ATXN1P54253 815 aaKnown RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 DAOAP59103 153 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 ZBTB6Q15916 424 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 BROXQ5VW32 411 aa20.26■□□□□ 0.83
UPF1-207ENST00000599848 CPNE2Q96FN4 548 aaPredicted RBP20.26■□□□□ 0.83
UPF1-207ENST00000599848 SCLYQ96I15 445 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms