RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SERPINA9Q86WD7 417 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 CCNJLQ8IV13 435 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 AGGF1Q8N302 714 aaeCLIP10.97□□□□□ -0.65
VRK3-210ENST00000596121 MPP5Q8N3R9 675 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 LILRA3Q8N6C8 439 aaPredicted RBP10.97□□□□□ -0.65
VRK3-210ENST00000596121 OR6C4Q8NGE1 309 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 MDM1Q8TC05 714 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 HDAC10Q969S8 669 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 ATXN7L3BQ96GX2 97 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 NAP1L3Q99457 506 aaPredicted RBP10.97□□□□□ -0.65
VRK3-210ENST00000596121 TRIM56Q9BRZ2 755 aaKnown RBP10.97□□□□□ -0.65
VRK3-210ENST00000596121 TIMM29Q9BSF4 260 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 LRRN3Q9H3W5 708 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 EVA1BQ9NVM1 165 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 ENTPD2Q9Y5L3 495 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 SAR1BQ9Y6B6 198 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 KIF26BQ2KJY2 2108 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 HEATR9A2RTY3 570 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 GOT2P00505 430 aaKnown RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 PROS1P07225 676 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 F3P13726 295 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 PNLIPP16233 465 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 MSH3P20585 1137 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 ITGALP20701 1170 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 ACRV1P26436 265 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 RPL10P27635 214 aaKnown RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 NMBRP28336 390 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 AKT1P31749 480 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 SLC19A1P41440 591 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 FNTAP49354 379 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 UBE2IP63279 158 aaKnown RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 CACNG1Q06432 222 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 CYP4F3Q08477 520 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 DMPKQ09013 629 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 GTF2H3Q13889 308 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 NFE2L1Q14494 772 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 CLCA4Q14CN2 919 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 SEPT7Q16181 437 aaKnown RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 INSCQ1MX18 579 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 SKIDA1Q1XH10 827 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 AMZ1Q400G9 498 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 GPR33Q49SQ1 333 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 BCL7AQ4VC05 210 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 PCID2Q5JVF3 399 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 FNBP1LQ5T0N5 605 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 LRRC8BQ6P9F7 803 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 CES3Q6UWW8 571 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 ZNF574Q6ZN55 896 aaPredicted RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 RBM44Q6ZP01 1051 aaKnown RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 USP53Q70EK8 1073 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 CLDN19Q8N6F1 224 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 KDF1Q8NAX2 398 aaPredicted RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 TTC25Q96NG3 672 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 OSGEPL1Q9H4B0 414 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 SYNDIG1Q9H7V2 258 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 TREX1Q9NSU2 369 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 SYBUQ9NX95 663 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 ZDHHC3Q9NYG2 299 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 MARCH4Q9P2E8 410 aaPredicted RBP10.96□□□□□ -0.65
VRK3-210ENST00000596121 CRLS1Q9UJA2 301 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 RIMKLBQ9ULI2 386 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 SLC30A1Q9Y6M5 507 aa10.96□□□□□ -0.65
VRK3-210ENST00000596121 ZZEF1O43149 2961 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 CTAGE9A4FU28 777 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 OR52A4PA6NMU1 304 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 RHPN2P1A8MT19 583 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 D6RAR5 112 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 GOLGA8MH3BSY2 632 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 OR1I1O60431 355 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 HOXB3P14651 431 aaPredicted RBP10.95□□□□□ -0.66
VRK3-210ENST00000596121 IVDP26440 423 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 ARNTP27540 789 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 ALDH4A1P30038 563 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 PBLDP30039 288 aaPredicted RBP10.95□□□□□ -0.66
VRK3-210ENST00000596121 CSF2RBP32927 897 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 FASLGP48023 281 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 NPY2RP49146 381 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 CDK16Q00536 496 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 SPIDRQ14159 915 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 AGAP9Q5VTM2 703 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 METRNLQ641Q3 311 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 ABRAXAS1Q6UWZ7 409 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 WASH2PQ6VEQ5 465 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 TAS2R42Q7RTR8 314 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 LDB1Q86U70 411 aaPredicted RBP10.95□□□□□ -0.66
VRK3-210ENST00000596121 AMZ2Q86W34 360 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 KLHL7Q8IXQ5 586 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 NAT8LQ8N9F0 302 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 SLCO2A1Q92959 643 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 ULK4Q96C45 1275 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 PRR11Q96HE9 360 aaPredicted RBP10.95□□□□□ -0.66
VRK3-210ENST00000596121 LINC00615Q96LM1 132 aaPredicted RBP10.95□□□□□ -0.66
VRK3-210ENST00000596121 DEPDC7Q96QD5 511 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 GFM1Q96RP9 751 aaKnown RBP10.95□□□□□ -0.66
VRK3-210ENST00000596121 COPS8Q99627 209 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 NUDT22Q9BRQ3 303 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 KIFC1Q9BW19 673 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 FOXP3Q9BZS1 431 aa10.95□□□□□ -0.66
VRK3-210ENST00000596121 SEMA6CQ9H3T2 930 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms