RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ZNF248Q8NDW4 579 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 TTC25Q96NG3 672 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 SLC46A1Q96NT5 459 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 C19orf43Q9BQ61 176 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 UGT1A7Q9HAW7 530 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 UGT1A10Q9HAW8 530 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 UGT1A8Q9HAW9 530 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 PRDM8Q9NQV8 689 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 KCNK4Q9NYG8 393 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 SLC23A2Q9UGH3 650 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 DNAJC16Q9Y2G8 782 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 LOXL2Q9Y4K0 774 aa14.88□□□□□ -0.03
TRIM28-205ENST00000595028 CDRT15L2A8MXV6 281 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 TNFSF15O95150 251 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 CTSCP53634 463 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 UBE2IP63279 158 aaKnown RBP14.87□□□□□ -0.03
TRIM28-205ENST00000595028 GPLD1P80108 840 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 SIX1Q15475 284 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-205ENST00000595028 PHF19Q5T6S3 580 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 NKAIN2Q5VXU1 208 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 SLC9B2Q86UD5 537 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 PIM3Q86V86 326 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 FBXO39Q8N4B4 442 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 TAB3Q8N5C8 712 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-205ENST00000595028 OR13C4Q8NGS5 318 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 ZNF398Q8TD17 642 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 C1orf54Q8WWF1 131 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 TMEM159Q96B96 161 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 SLC38A3Q99624 504 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 TLR10Q9BXR5 811 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 SEMA6CQ9H3T2 930 aa14.87□□□□□ -0.03
TRIM28-205ENST00000595028 ERI2A8K979 691 aaKnown RBP14.86□□□□□ -0.03
TRIM28-205ENST00000595028 PDZK1P1A8MUH7 402 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 LDB2O43679 373 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 DUX1O43812 170 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 SRP72O76094 671 aaKnown RBP14.86□□□□□ -0.03
TRIM28-205ENST00000595028 IFNB1P01574 187 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 HGFP14210 728 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 VCLP18206 1134 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 AKT1P31749 480 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 STIP1P31948 543 aaKnown RBP14.86□□□□□ -0.03
TRIM28-205ENST00000595028 EPHA4P54764 986 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 XIAPP98170 497 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 CCDC173Q0VFZ6 552 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 NFATC2Q13469 925 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 SQSTM1Q13501 440 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 C16orf72Q14CZ0 275 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 USP53Q70EK8 1073 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 RASGEF1AQ8N9B8 481 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 OR10G6Q8NH81 332 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 SH3KBP1Q96B97 665 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 CCDC74BQ96LY2 380 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 DPYSL5Q9BPU6 564 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 ZMYND15Q9H091 742 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 ASB8Q9H765 288 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 SCHIP1Q9P0W5 487 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-205ENST00000595028 CPNE7Q9UBL6 633 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 ZNF148Q9UQR1 794 aa14.86□□□□□ -0.03
TRIM28-205ENST00000595028 IGHV5-10-1A0A0J9YXX1 117 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 LILRA5A6NI73 299 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 PSMD3O43242 534 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 JMJD7P0C870 316 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 THRAP10827 490 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 MSH3P20585 1137 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 ITGALP20701 1170 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 IDSP22304 550 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 FDFT1P37268 417 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 HADHAP40939 763 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 TMPRSS15P98073 1019 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 KCNC4Q03721 635 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 DMPKQ09013 629 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 SNX1Q13596 522 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 SEPT7Q16181 437 aaKnown RBP14.85□□□□□ -0.03
TRIM28-205ENST00000595028 LONRF2Q1L5Z9 754 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 AGAP9Q5VTM2 703 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 ZNF574Q6ZN55 896 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-205ENST00000595028 LINC00523Q86TU6 105 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 SPACA3Q8IXA5 215 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 OR4D9Q8NGE8 314 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 KCNE4Q8WWG9 221 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 ULK4Q96C45 1275 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 ZNF514Q96K75 400 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-205ENST00000595028 DNAJC1Q96KC8 554 aaKnown RBP14.85□□□□□ -0.03
TRIM28-205ENST00000595028 CMKLR1Q99788 373 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 PISDQ9UG56 409 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 CRLS1Q9UJA2 301 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 PCDHGA7Q9Y5G6 932 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 PIKFYVEQ9Y2I7 2098 aa14.85□□□□□ -0.03
TRIM28-205ENST00000595028 GOLGA6L3A6NEY3 463 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 OR2AG2A6NM03 316 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 AGAP14A8MT82 685 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 CCL22O00626 93 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 HGSO14964 777 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-205ENST00000595028 KCNJ13O60928 360 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 FGGP02679 453 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 BRAFP15056 766 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 MC4RP32245 332 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 LIMK2P53671 638 aa14.84□□□□□ -0.03
TRIM28-205ENST00000595028 DRG2P55039 364 aaKnown RBP14.84□□□□□ -0.03
TRIM28-205ENST00000595028 TLE3Q04726 772 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms