RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 GUCY1A3Q02108 690 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 PDAP1Q13442 181 aaKnown RBP24.77■■□□□ 1.56
SHMT1-207ENST00000580002 N4BP2L1Q5TBK1 243 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-207ENST00000580002 HEXDCQ8WVB3 486 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 KCNJ9Q92806 393 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 ALKBH8Q96BT7 664 aaKnown RBP24.77■■□□□ 1.56
SHMT1-207ENST00000580002 BIRC7Q96CA5 298 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 PKNOX2Q96KN3 472 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 TEX101Q9BY14 249 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 CAAP1Q9H8G2 361 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 SMG5Q9UPR3 1016 aaKnown RBP24.77■■□□□ 1.56
SHMT1-207ENST00000580002 GON4LQ3T8J9 2241 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 ZDBF2Q9HCK1 2354 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 TMEM202A6NGA9 273 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 E5RI56 91 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 ZNF8P17098 575 aaPredicted RBP24.76■■□□□ 1.55
SHMT1-207ENST00000580002 CCR7P32248 378 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 KIAA0895LQ68EN5 471 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 TMEM220Q6QAJ8 160 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 TSPAN17Q96FV3 270 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 BMFQ96LC9 184 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 UBXN10Q96LJ8 280 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 FAM8A1Q9UBU6 413 aa24.76■■□□□ 1.55
SHMT1-207ENST00000580002 H3BMM5 538 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 LATO43561 262 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 ZNF217O75362 1048 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 VPS26AO75436 327 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 CDK14O94921 469 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 ASMTLO95671 621 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 FUCA1P04066 466 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 ZNF37AP17032 561 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-207ENST00000580002 CCT5P48643 541 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 TAF1BQ53T94 588 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-207ENST00000580002 TPRG1LQ5T0D9 272 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 CPNE9Q8IYJ1 553 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 CAMKK1Q8N5S9 505 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 LILRA3Q8N6C8 439 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-207ENST00000580002 EEF1AKMT1Q8WVE0 214 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 PAIP2Q9BPZ3 127 aaKnown RBP24.75■■□□□ 1.55
SHMT1-207ENST00000580002 TRIM39Q9HCM9 518 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 MKS1Q9NXB0 559 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 DHRS7Q9Y394 339 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 ETV4P43268 484 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 LVRNQ6Q4G3 990 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 ARMC2Q8NEN0 867 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 WDR26Q9H7D7 661 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 CAMSAP3Q9P1Y5 1249 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-207ENST00000580002 DCDC2Q9UHG0 476 aa24.75■■□□□ 1.55
SHMT1-207ENST00000580002 TRMT6Q9UJA5 497 aaKnown RBP24.75■■□□□ 1.55
SHMT1-207ENST00000580002 AXIN1O15169 862 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 LILRB5O75023 590 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 TSPAN12O95859 305 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 SBK3P0C264 359 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 BCKDHBP21953 392 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 OXTRP30559 389 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 KCNC1P48547 511 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 CCR3P51677 355 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 ZNF547Q8IVP9 402 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 TMEM151AQ8N4L1 468 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 ASB12Q8WXK4 309 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 APOOQ9BUR5 198 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 KCTD5Q9NXV2 234 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 COMMD10Q9Y6G5 202 aa24.74■■□□□ 1.55
SHMT1-207ENST00000580002 A0A087X1B8 175 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 WDR91A4D1P6 747 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 KLHL2O95198 593 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 CBX1P83916 185 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 ACSBG2Q5FVE4 666 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 TMEM105Q8N8V8 129 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 FOXJ1Q92949 421 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 CABS1Q96KC9 395 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 ORAI3Q9BRQ5 295 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 MECRQ9BV79 373 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 CPSF2Q9P2I0 782 aaKnown RBP24.73■■□□□ 1.55
SHMT1-207ENST00000580002 ABCA7Q8IZY2 2146 aa24.73■■□□□ 1.55
SHMT1-207ENST00000580002 CFAP99D6REC4 459 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 SCAMP1O15126 338 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 ZBTB14O43829 449 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 PLIN3O60664 434 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 GLRA3O75311 464 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 OR56A5P0C7T3 313 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 RALBP11234 206 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 PBLDP30039 288 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 CRTC3Q6UUV7 619 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 GCNT7Q6ZNI0 430 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 TBC1D1Q86TI0 1168 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 VRK3Q8IV63 474 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 PTERQ96BW5 349 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 TM7SF3Q9NS93 570 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 NKIRAS1Q9NYS0 192 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 GULP1Q9UBP9 304 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 ANKRD6Q9Y2G4 727 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 PROCP04070 461 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 PYGLP06737 847 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 CD9P21926 228 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 HNRNPA2B1P22626 353 aaKnown RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 FNTBP49356 437 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 PLA2G4EQ3MJ16 856 aa24.72■■□□□ 1.55
SHMT1-207ENST00000580002 MAML2Q8IZL2 1156 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-207ENST00000580002 FSTL5Q8N475 847 aaPredicted RBP24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms