RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SEPT6Q14141 434 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 SIX1Q15475 284 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-206ENST00000579558 TMEM220Q6QAJ8 160 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 CCDC74BQ96LY2 380 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 CMKLR1Q99788 373 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 DPYSL5Q9BPU6 564 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 C19orf43Q9BQ61 176 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 LDHAL6BQ9BYZ2 381 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-206ENST00000579558 ETNK1Q9HBU6 452 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 PIH1D1Q9NWS0 290 aaKnown RBP23.51■■□□□ 1.35
SHMT1-206ENST00000579558 AKAP7Q9P0M2 348 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-206ENST00000579558 SCHIP1Q9P0W5 487 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-206ENST00000579558 CRLS1Q9UJA2 301 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 IGHV5-10-1A0A0J9YXX1 117 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 OR2AG2A6NM03 316 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 DUX1O43812 170 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 HOXB3P14651 431 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-206ENST00000579558 ITGALP20701 1170 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 RPL10P27635 214 aaKnown RBP23.5■■□□□ 1.35
SHMT1-206ENST00000579558 UBE2IP63279 158 aaKnown RBP23.5■■□□□ 1.35
SHMT1-206ENST00000579558 POU6F1Q14863 301 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 C16orf72Q14CZ0 275 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 LONRF2Q1L5Z9 754 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 DET1Q7L5Y6 550 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 CLEC14AQ86T13 490 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 LINC00523Q86TU6 105 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 AMZ2Q86W34 360 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 JAMLQ86YT9 394 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 TRIM48Q8IWZ4 208 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 CCDC89Q8N998 374 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 OR4D9Q8NGE8 314 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 MAIP1Q8WWC4 291 aa23.5■■□□□ 1.35
SHMT1-206ENST00000579558 DNAJC1Q96KC8 554 aaKnown RBP23.5■■□□□ 1.35
SHMT1-206ENST00000579558 BPTFQ12830 3046 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 ERI2A8K979 691 aaKnown RBP23.49■■□□□ 1.35
SHMT1-206ENST00000579558 CCL22O00626 93 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 CEP104O60308 925 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 KCNJ13O60928 360 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 POP7O75817 140 aaKnown RBP23.49■■□□□ 1.35
SHMT1-206ENST00000579558 VIPP01282 170 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 FGGP02679 453 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 XRCC1P18887 633 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-206ENST00000579558 ITIH1P19827 911 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 MAPK9P45984 424 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 LMAN1P49257 510 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 LIMK2P53671 638 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 EPHA4P54764 986 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 DRG2P55039 364 aaKnown RBP23.49■■□□□ 1.35
SHMT1-206ENST00000579558 CFHR1Q03591 330 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 CCNG2Q16589 344 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 FNBP1LQ5T0N5 605 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 ABRAXAS1Q6UWZ7 409 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 PRUNE1Q86TP1 453 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 SPACA3Q8IXA5 215 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 RCBTB1Q8NDN9 531 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 KCNE4Q8WWG9 221 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 ULK4Q96C45 1275 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 ZNF514Q96K75 400 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-206ENST00000579558 TMEM9Q9P0T7 183 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 DNMT3AQ9Y6K1 912 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-206ENST00000579558 SLC30A1Q9Y6M5 507 aa23.49■■□□□ 1.35
SHMT1-206ENST00000579558 CACNA1GO43497 2377 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 E7EVH7 732 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 ETS1P14921 441 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 BRAFP15056 766 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 MPSTP25325 297 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 PBLDP30039 288 aaPredicted RBP23.48■■□□□ 1.35
SHMT1-206ENST00000579558 MC4RP32245 332 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 CXCR5P32302 372 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 SLC19A1P41440 591 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 TRA2AQ13595 282 aaKnown RBP eCLIP23.48■■□□□ 1.35
SHMT1-206ENST00000579558 AGAP9Q5VTM2 703 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 TMEM71Q6P5X7 295 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 WASH2PQ6VEQ5 465 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 SNX20Q7Z614 316 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 DNAAF3Q8N9W5 541 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 OR52K1Q8NGK4 314 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 DCUN1D1Q96GG9 259 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 FAM96AQ9H5X1 160 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 WASH6PQ9NQA3 447 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 RAB6BQ9NRW1 208 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 NLE1Q9NVX2 485 aaPredicted RBP23.48■■□□□ 1.35
SHMT1-206ENST00000579558 PAK5Q9P286 719 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 ZNF624Q9P2J8 865 aaPredicted RBP23.48■■□□□ 1.35
SHMT1-206ENST00000579558 ZKSCAN5Q9Y2L8 839 aa23.48■■□□□ 1.35
SHMT1-206ENST00000579558 LILRA5A6NI73 299 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 AGAP14A8MT82 685 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 HGSO14964 777 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-206ENST00000579558 THRAP10827 490 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 SLC5A2P31639 672 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 HALP42357 657 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 DMPKQ09013 629 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 CDH17Q12864 832 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 DRICH1Q6PGQ1 229 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-206ENST00000579558 PPP1R21Q6ZMI0 780 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 PDZD3Q86UT5 571 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 NXPE1Q8N323 547 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 BEND7Q8N7W2 519 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-206ENST00000579558 GLIS1Q8NBF1 620 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 STYXQ8WUJ0 223 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms