RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TRMT13Q9NUP7 481 aaKnown RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 ING3Q9NXR8 418 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 EHD3Q9NZN3 535 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 AURKCQ9UQB9 309 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 PIPSLA2A3N6 862 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 C3orf70A6NLC5 250 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 K7ERI5 159 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 DFNA5O60443 496 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 PROSCO94903 275 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ASPAP45381 313 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 FAAP100Q0VG06 881 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 CLCA4Q14CN2 919 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ADGRD1Q6QNK2 874 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 KRT74Q7RTS7 529 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 LINC00523Q86TU6 105 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 DDIASQ8IXT1 998 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 KIAA0319LQ8IZA0 1049 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 PIWIL2Q8TC59 973 aaKnown RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 CNDP2Q96KP4 475 aaKnown RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 ALOXE3Q9BYJ1 711 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 FBXO8Q9NRD0 319 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 NPAP1Q9NZP6 1156 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 TJP2Q9UDY2 1190 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 RGSL1A5PLK6 1076 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 FAM155AB1AL88 458 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 F5H423 210 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 B4GALT5O43286 388 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 BCAS2O75934 225 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 DDNO94850 711 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 STAU1O95793 577 aaKnown RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 GLDCP23378 1020 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 KLRC2P26717 231 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 HOXA1P49639 335 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 ACY1Q03154 408 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 INCA1Q0VD86 236 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ZNF273Q14593 569 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 PTPN20Q4JDL3 420 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 EFHC2Q5JST6 749 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 PLD3Q8IV08 490 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 KDM1BQ8NB78 822 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ZFAND1Q8TCF1 268 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 URGCPQ8TCY9 931 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ZNF606Q8WXB4 792 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 YIPF5Q969M3 257 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ARL5BQ96KC2 179 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 MSTO1Q9BUK6 570 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 MBD2Q9UBB5 411 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 SLC23A1Q9UHI7 598 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 LAMP5Q9UJQ1 280 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 PLLPQ9Y342 182 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 C17orf113A0A1B0GUU1 675 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 CPNE6O95741 557 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 STAT5BP51692 787 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 RAB14P61106 215 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 BNC1Q01954 994 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 TP53BP1Q12888 1972 aaPredicted RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 KLF10Q13118 480 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 METTL7BQ6UX53 244 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 SCARA5Q6ZMJ2 495 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 RAB43Q86YS6 212 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 SLC44A2Q8IWA5 706 aaPredicted RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 ADGRF2Q8IZF7 708 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 AGR3Q8TD06 166 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 TRAPPC12Q8WVT3 735 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 COPS5Q92905 334 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 PTERQ96BW5 349 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 RCN3Q96D15 328 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 RBM18Q96H35 190 aaKnown RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 RACGAP1Q9H0H5 632 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 TRPM5Q9NZQ8 1165 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 SNX6Q9UNH7 406 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 KLF11O14901 512 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 ATP5BP06576 529 aaKnown RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 ZNF806P0C7X5 589 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 ETS1P14921 441 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 ERP29P30040 261 aaKnown RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 GARSP41250 739 aaKnown RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 LAMTOR4Q0VGL1 99 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 PIGGQ5H8A4 983 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 GPAT2Q6NUI2 795 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 LRFN4Q6PJG9 635 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 USP50Q70EL3 339 aaPredicted RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 CATSPER4Q7RTX7 472 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 KRT73Q86Y46 540 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 DHRSXQ8N5I4 330 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 SLC37A3Q8NCC5 494 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 KLHL6Q8WZ60 621 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 MS4A7Q9GZW8 240 aaPredicted RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 ILKAPQ9H0C8 392 aaPredicted RBP10.73□□□□□ -0.69
CLK3-226ENST00000569406 TNKS2Q9H2K2 1166 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 CNTN3Q9P232 1028 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 SIX4Q9UIU6 781 aa10.73□□□□□ -0.69
CLK3-226ENST00000569406 TMEM191CA6NGB0 347 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CHURC1-FNTBB4DL54 471 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 TLL1O43897 1013 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 GJA5P36382 358 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 SMTNL2Q2TAL5 461 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 BCL7AQ4VC05 210 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 GPAT3Q53EU6 434 aa10.72□□□□□ -0.69
CLK3-226ENST00000569406 CCNYL2Q5T2Q4 361 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms