RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DRG2P55039 364 aaKnown RBP15.8■□□□□ 0.12
CLN3-229ENST00000567963 SLC1A5Q15758 541 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 ZDHHC20Q5W0Z9 365 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 TRAPPC5Q8IUR0 188 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 RBM12BQ8IXT5 1001 aaKnown RBP15.8■□□□□ 0.12
CLN3-229ENST00000567963 KATNAL2Q8IYT4 538 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 RCOR2Q8IZ40 523 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 UNC5BQ8IZJ1 945 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 ZNF567Q8N184 647 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 SLC25A41Q8N5S1 370 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 TTC25Q96NG3 672 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 CATSPER2Q96P56 530 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 TGM7Q96PF1 710 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 FCRL5Q96RD9 977 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 GOLPH3Q9H4A6 298 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 IL17CQ9P0M4 197 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 KLHL8Q9P2G9 620 aaPredicted RBP15.8■□□□□ 0.12
CLN3-229ENST00000567963 WDR37Q9Y2I8 494 aa15.8■□□□□ 0.12
CLN3-229ENST00000567963 hCG_1818297A0A087WSY0 165 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 KCNJ13O60928 360 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 VCLP18206 1134 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 CHRNA4P43681 627 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 TNNT3P45378 269 aaPredicted RBP15.79■□□□□ 0.12
CLN3-229ENST00000567963 POLE2P56282 527 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 FOXM1Q08050 763 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 GTF2H3Q13889 308 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 GPR18Q14330 331 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 ATG14Q6ZNE5 492 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 CXorf40BQ96DE9 158 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 OXNAD1Q96HP4 312 aaPredicted RBP15.79■□□□□ 0.12
CLN3-229ENST00000567963 ZNF768Q9H5H4 540 aaKnown RBP15.79■□□□□ 0.12
CLN3-229ENST00000567963 HACD3Q9P035 362 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 TRIM10Q9UDY6 481 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 IL17BQ9UHF5 180 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 MYO18BQ8IUG5 2567 aa15.79■□□□□ 0.12
CLN3-229ENST00000567963 ZNF106Q9H2Y7 1883 aaKnown RBP15.79■□□□□ 0.12
CLN3-229ENST00000567963 TLN1Q9Y490 2541 aaKnown RBP15.79■□□□□ 0.12
CLN3-229ENST00000567963 F5H423 210 aaPredicted RBP15.78■□□□□ 0.12
CLN3-229ENST00000567963 TERTO14746 1132 aaKnown RBP15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A9O60656 530 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 LCA5LO95447 670 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A6P19224 532 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A1P22309 533 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A4P22310 534 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 SPAM1P38567 509 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 CCR10P46092 362 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 CAPZBP47756 277 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 LEPRP48357 1165 aaKnown RBP15.78■□□□□ 0.12
CLN3-229ENST00000567963 SEPHS1P49903 392 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 CSRP3P50461 194 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 SH3BP2P78314 561 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 MPP3Q13368 585 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 MAP7Q14244 749 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 CHRNA6Q15825 494 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 LDLRAP1Q5SW96 308 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 GLT6D1Q7Z4J2 308 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 ESX1Q8N693 406 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 TC2NQ8N9U0 490 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 BLOC1S5Q8TDH9 187 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 RSC1A1Q92681 617 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 HAUS1Q96CS2 278 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 TRIM4Q9C037 500 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A7Q9HAW7 530 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A10Q9HAW8 530 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 UGT1A8Q9HAW9 530 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 TUBD1Q9UJT1 453 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 GLYATL1P3A0A0U1RQE8 302 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 HACD1B0YJ81 288 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 GPR39O43194 453 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 KIF1CO43896 1103 aaKnown RBP15.78■□□□□ 0.12
CLN3-229ENST00000567963 RASSF9O75901 435 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 HLA-DPA1P20036 260 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 CA5AP35218 305 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 STAT5AP42229 794 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 MARCKSL1P49006 195 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 DMPKQ09013 629 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 KCNAB2Q13303 367 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 ITGA9Q13797 1035 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 IL11RAQ14626 422 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 PPP2R5EQ16537 467 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 FAM151BQ6UXP7 276 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 AMZ2Q86W34 360 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 CCDC50Q8IVM0 306 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 RASGEF1AQ8N9B8 481 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 DDHD1Q8NEL9 900 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 IPMKQ8NFU5 416 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 ZDHHC12Q96GR4 267 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 QKIQ96PU8 341 aaKnown RBP eCLIP15.78■□□□□ 0.12
CLN3-229ENST00000567963 OR6C1Q96RD1 312 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 ULBP3Q9BZM4 244 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 RAB33BQ9H082 229 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 EPHA6Q9UF33 1036 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 TRHDEQ9UKU6 1024 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 TFR2Q9UP52 801 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.78■□□□□ 0.12
CLN3-229ENST00000567963 PKP3Q9Y446 797 aa15.78■□□□□ 0.12
CLN3-229ENST00000567963 DNMT3AQ9Y6K1 912 aaPredicted RBP15.78■□□□□ 0.12
CLN3-229ENST00000567963 GAPDHSO14556 408 aaPredicted RBP15.77■□□□□ 0.11
CLN3-229ENST00000567963 BUD23O43709 281 aaKnown RBP15.77■□□□□ 0.11
CLN3-229ENST00000567963 POP7O75817 140 aaKnown RBP15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms