RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GTF2H3Q13889 308 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 N4BP2L1Q5TBK1 243 aaPredicted RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 GUSBP11Q6P575 273 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 OGFOD3Q6PK18 319 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 ZDHHC24Q6UX98 284 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 DGLUCYQ7Z3D6 616 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 TMEM135Q86UB9 458 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 SDR16C5Q8N3Y7 309 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 STAMBPL1Q96FJ0 436 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 DUSP23Q9BVJ7 150 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CARD6Q9BX69 1037 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CATSPERZQ9NTU4 200 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 SAMD15Q9P1V8 674 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 WHRNQ9P202 907 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 RPS6KL1Q9Y6S9 549 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CTAGE15A4D2H0 777 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 GPR89AB7ZAQ6 455 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 BHMG1C9JSJ3 638 aaPredicted RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 CD3EAPO15446 510 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 SNX2O60749 519 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 FTH1P19P0C7X4 201 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 GPR89BP0CG08 455 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CTAGE8P0CG41 777 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CKMT1AP12532 417 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 PBLDP30039 288 aaPredicted RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 ELK3P41970 407 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 MAZP56270 477 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 CLDN6P56747 220 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 LRP8Q14114 963 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 FASTKD3Q14CZ7 662 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 INSCQ1MX18 579 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 PERM1Q5SV97 790 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 KIAA0930Q6ICG6 404 aaPredicted RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 C8orf74Q6P047 294 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CTAGE6Q86UF2 777 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 CTAGE4Q8IX94 777 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 NAGSQ8N159 534 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 LILRA3Q8N6C8 439 aaPredicted RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 GPR156Q8NFN8 814 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 ZDHHC1Q8WTX9 485 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 DCUN1D1Q96GG9 259 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 SGSM3Q96HU1 749 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 EBNA1BP2Q99848 306 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 ZCCHC2Q9C0B9 1178 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 PRDM8Q9NQV8 689 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 SCHIP1Q9P0W5 487 aaPredicted RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 DMGDHQ9UI17 866 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 PTPRBP23467 1997 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 NCOR2Q9Y618 2525 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 MAGEB16A2A368 324 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 CPED1A4D0V7 1026 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 A6NCN8 305 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 TOP3BO95985 862 aaKnown RBP19.24■□□□□ 0.67
CLN3-225ENST00000566824 ATP1B2P14415 290 aaPredicted RBP19.24■□□□□ 0.67
CLN3-225ENST00000566824 DAB2P98082 770 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 BCL7AQ4VC05 210 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 FASTKD1Q53R41 847 aaKnown RBP19.24■□□□□ 0.67
CLN3-225ENST00000566824 ANKMY2Q8IV38 441 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 ARL10Q8N8L6 244 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 SCG3Q8WXD2 468 aaKnown RBP19.24■□□□□ 0.67
CLN3-225ENST00000566824 ART4Q93070 314 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 TIMM29Q9BSF4 260 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 OSGEPL1Q9H4B0 414 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 FAM8A1Q9UBU6 413 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 RABGEF1Q9UJ41 708 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 PADI4Q9UM07 663 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 CHMP2BQ9UQN3 213 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 TEX264Q9Y6I9 313 aa19.24■□□□□ 0.67
CLN3-225ENST00000566824 COL27A1Q8IZC6 1860 aaPredicted RBP19.23■□□□□ 0.67
CLN3-225ENST00000566824 ZNF500O60304 480 aaPredicted RBP19.23■□□□□ 0.67
CLN3-225ENST00000566824 DKK1O94907 266 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 ACP1P24666 158 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 NFE2L1Q14494 772 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 NR0B2Q15466 257 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 HIF1AQ16665 826 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 DNAJC21Q5F1R6 531 aaKnown RBP19.23■□□□□ 0.67
CLN3-225ENST00000566824 C17orf82Q86X59 251 aaPredicted RBP19.23■□□□□ 0.67
CLN3-225ENST00000566824 PDIK1LQ8N165 341 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 MNS1Q8NEH6 495 aa19.23■□□□□ 0.67
CLN3-225ENST00000566824 UTP11Q9Y3A2 253 aaKnown RBP19.23■□□□□ 0.67
CLN3-225ENST00000566824 SMAPO00193 183 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 USP1O94782 785 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 BRAFP15056 766 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 PGAM1P18669 254 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 RPL10P27635 214 aaKnown RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 DEKP35659 375 aaKnown RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 PRLHRP49683 370 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 CLCNKAP51800 687 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 DRG2P55039 364 aaKnown RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 PLTPP55058 493 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 ARL4CP56559 192 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 GUCY2DQ02846 1103 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 PDIA2Q13087 525 aaKnown RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 HLTFQ14527 1009 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-225ENST00000566824 ITIH4Q14624 930 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 CRYMQ14894 314 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 SEPT7Q16181 437 aaKnown RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 ZNF658BQ4V348 819 aaPredicted RBP19.22■□□□□ 0.67
CLN3-225ENST00000566824 C14orf28Q4W4Y0 310 aa19.22■□□□□ 0.67
CLN3-225ENST00000566824 ZNF789Q5FWF6 425 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms