RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ZNF398Q8TD17 642 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 ART4Q93070 314 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 SPATA13Q96N96 652 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 ZCCHC2Q9C0B9 1178 aaKnown RBP20.41■□□□□ 0.86
CLN3-219ENST00000565778 OCIAD1Q9NX40 245 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 SLC39A1Q9NY26 324 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 PDP2Q9P2J9 529 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 IGSF10Q6WRI0 2623 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 LOC400499M0QZD8 3231 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 EFCAB7A8K855 629 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 GOLGA6L6A8MZA4 724 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 EFSO43281 561 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 POP7O75817 140 aaKnown RBP20.4■□□□□ 0.86
CLN3-219ENST00000565778 CD82P27701 267 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 ADRA1AP35348 466 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 UBE2IP63279 158 aaKnown RBP20.4■□□□□ 0.86
CLN3-219ENST00000565778 OLIG2Q13516 323 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 TMEM220Q6QAJ8 160 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 ABRAXAS1Q6UWZ7 409 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 RASGEF1AQ8N9B8 481 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 OR4K2Q8NGD2 314 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 SNRNP27Q8WVK2 155 aaKnown RBP20.4■□□□□ 0.86
CLN3-219ENST00000565778 LRRC45Q96CN5 670 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 PPP1R2P1Q96PQ5 205 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 EPB41L1Q9H4G0 881 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 ZNF624Q9P2J8 865 aaPredicted RBP20.4■□□□□ 0.86
CLN3-219ENST00000565778 KLHL3Q9UH77 587 aa20.4■□□□□ 0.86
CLN3-219ENST00000565778 PTPRQQ9UMZ3 2332 aa20.39■□□□□ 0.86
CLN3-219ENST00000565778 ERVH48-1M5A8F1 160 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 DDX3YO15523 660 aaKnown RBP20.39■□□□□ 0.85
CLN3-219ENST00000565778 GPR39O43194 453 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 KCNJ13O60928 360 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 ZNF189O75820 626 aaPredicted RBP20.39■□□□□ 0.85
CLN3-219ENST00000565778 PRB1P04280 392 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 AMD1P17707 334 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 DRG2P55039 364 aaKnown RBP20.39■□□□□ 0.85
CLN3-219ENST00000565778 MANEAQ5SRI9 462 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 GPRC6AQ5T6X5 926 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 C11orf96Q7Z7L8 435 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 AMZ2Q86W34 360 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 CXorf40BQ96DE9 158 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 KCTD3Q9Y597 815 aa20.39■□□□□ 0.85
CLN3-219ENST00000565778 LILRA5A6NI73 299 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 GAPDHSO14556 408 aaPredicted RBP20.38■□□□□ 0.85
CLN3-219ENST00000565778 CRTAMO95727 393 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 BRAFP15056 766 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 TYRP1P17643 537 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 MSH3P20585 1137 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 AKT1P31749 480 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 CA5AP35218 305 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 HALP42357 657 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 SPARCL1Q14515 664 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 DCAF12Q5T6F0 453 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 KIAA1614Q5VZ46 1190 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 WASH2PQ6VEQ5 465 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 ARHGEF18Q6ZSZ5 1173 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 TMEM26Q6ZUK4 368 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 ARHGAP22Q7Z5H3 698 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 PLXDC1Q8IUK5 500 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 FAM71DQ8N9W8 422 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 DDHD1Q8NEL9 900 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 JPH3Q8WXH2 748 aaPredicted RBP20.38■□□□□ 0.85
CLN3-219ENST00000565778 TBL1YQ9BQ87 522 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 ASPSCR1Q9BZE9 553 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 ASB8Q9H765 288 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 UCK1Q9HA47 277 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 WASH6PQ9NQA3 447 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 PCDHGA3Q9Y5H0 932 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 B3GALT1Q9Y5Z6 326 aa20.38■□□□□ 0.85
CLN3-219ENST00000565778 DNMT3AQ9Y6K1 912 aaPredicted RBP20.38■□□□□ 0.85
CLN3-219ENST00000565778 ZFC3H1O60293 1989 aaKnown RBP20.37■□□□□ 0.85
CLN3-219ENST00000565778 PRR19A6NJB7 356 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 OR2AG2A6NM03 316 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 OR52A4PA6NMU1 304 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 B4E171 279 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 STMND1H3BQB6 276 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 PRAMEF1O95521 474 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 TSPAN7P41732 249 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 CTSCP53634 463 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 TMPRSS15P98073 1019 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 PDE1BQ01064 536 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 SRSF6Q13247 344 aaKnown RBP20.37■□□□□ 0.85
CLN3-219ENST00000565778 CLCA4Q14CN2 919 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 PARP6Q2NL67 630 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 AGAP9Q5VTM2 703 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 DTX1Q86Y01 620 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 RNF10Q8N5U6 811 aaKnown RBP20.37■□□□□ 0.85
CLN3-219ENST00000565778 FKBPLQ9UIM3 349 aa20.37■□□□□ 0.85
CLN3-219ENST00000565778 SRP72O76094 671 aaKnown RBP20.36■□□□□ 0.85
CLN3-219ENST00000565778 UBXN7O94888 489 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 C19orf57Q0VDD7 668 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 LONRF2Q1L5Z9 754 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 FNBP1LQ5T0N5 605 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 ANKS6Q68DC2 871 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 DET1Q7L5Y6 550 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 VASH2Q86V25 355 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 PMEPA1Q969W9 287 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 SGF29Q96ES7 293 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 HES6Q96HZ4 224 aa20.36■□□□□ 0.85
CLN3-219ENST00000565778 DDA1Q9BW61 102 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms