RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HES6Q96HZ4 224 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 SPATA13Q96N96 652 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 C19orf43Q9BQ61 176 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 DESI2Q9BSY9 194 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 FICDQ9BVA6 458 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 SLC40A1Q9NP59 571 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 KCTD3Q9Y597 815 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 B3GALT1Q9Y5Z6 326 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 ARL5AQ9Y689 179 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 FASNP49327 2511 aaKnown RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 GLYATL1P3A0A0U1RQE8 302 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 TCRBV7S2A1N4TA0A589 114 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 KCNN4O15554 427 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 DUX1O43812 170 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 C9P02748 559 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 NAP1L1P55209 391 aaKnown RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 INSCQ1MX18 579 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 SDK2Q58EX2 2172 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 GPRC6AQ5T6X5 926 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 ITPRIPL1Q6GPH6 555 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 DARS2Q6PI48 645 aaKnown RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 FAM83HQ6ZRV2 1179 aaPredicted RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 TMEM26Q6ZUK4 368 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 SLC35B2Q8TB61 432 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 NCSTNQ92542 709 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 ART4Q93070 314 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 APOL2Q9BQE5 337 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 DDA1Q9BW61 102 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 FSD1LQ9BXM9 530 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 ZNF106Q9H2Y7 1883 aaKnown RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 EPB41L1Q9H4G0 881 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 AMFRQ9UKV5 643 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 DNAJC16Q9Y2G8 782 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 R3HDM2Q9Y2K5 976 aaKnown RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 AAR2Q9Y312 384 aaKnown RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 CAPN6Q9Y6Q1 641 aa14.62□□□□□ -0.07
CLN3-213ENST00000565047 MN1Q10571 1320 aaPredicted RBP14.62□□□□□ -0.07
CLN3-213ENST00000565047 MACROD2A1Z1Q3 448 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 OR52A4PA6NMU1 304 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 MIF4GDA9UHW6 222 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 KCNJ13O60928 360 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 POP7O75817 140 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 METTL18O95568 372 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 FTCDO95954 541 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 LPOP22079 712 aaPredicted RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 RPL10P27635 214 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 CSTF2P33240 577 aaKnown RBP eCLIP14.61□□□□□ -0.07
CLN3-213ENST00000565047 DRG2P55039 364 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 MC2RQ01718 297 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 LDLRAP1Q5SW96 308 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 CCDC181Q5TID7 509 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 KIAA1614Q5VZ46 1190 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 PEX26Q7Z412 305 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 ZNF843Q8N446 348 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 AVL9Q8NBF6 648 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 OR4K2Q8NGD2 314 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 ZNF398Q8TD17 642 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 NKD1Q969G9 470 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 AHCYL2Q96HN2 611 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 SEMA4CQ9C0C4 833 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 OSGEPL1Q9H4B0 414 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 POT1Q9NUX5 634 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 SIDT1Q9NXL6 827 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 AKAP7Q9P0M2 348 aaPredicted RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 PKP3Q9Y446 797 aa14.61□□□□□ -0.07
CLN3-213ENST00000565047 DNMT3AQ9Y6K1 912 aaPredicted RBP14.61□□□□□ -0.07
CLN3-213ENST00000565047 EFCAB7A8K855 629 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 STX7O15400 261 aaKnown RBP14.6□□□□□ -0.07
CLN3-213ENST00000565047 LDB2O43679 373 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 ANKRD34CP0C6C1 535 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 IDSP22304 550 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 ZNF140P52738 457 aaPredicted RBP14.6□□□□□ -0.07
CLN3-213ENST00000565047 GDF10P55107 478 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 GFERP55789 205 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 KIF5AQ12840 1032 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 ITGA9Q13797 1035 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 SEPT7Q16181 437 aaKnown RBP14.6□□□□□ -0.07
CLN3-213ENST00000565047 TMEM164Q5U3C3 297 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 MICALCLQ6ZW33 695 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 KIAA1328Q86T90 577 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 RNF10Q8N5U6 811 aaKnown RBP14.6□□□□□ -0.07
CLN3-213ENST00000565047 OR13C4Q8NGS5 318 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 STN1Q9H668 368 aaKnown RBP14.6□□□□□ -0.07
CLN3-213ENST00000565047 FBXO8Q9NRD0 319 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 SLC39A1Q9NY26 324 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 PILRAQ9UKJ1 303 aa14.6□□□□□ -0.07
CLN3-213ENST00000565047 BAHCC1Q9P281 2608 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 C2orf81A6NN90 581 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 A8MU76 341 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 STMND1H3BQB6 276 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 SRP72O76094 671 aaKnown RBP14.59□□□□□ -0.07
CLN3-213ENST00000565047 PRAMEF1O95521 474 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 PSMA3P25788 255 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 GPR18Q14330 331 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 SPARCL1Q14515 664 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 PARP6Q2NL67 630 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 LINC00303Q3SY05 128 aa14.59□□□□□ -0.07
CLN3-213ENST00000565047 ZNF658BQ4V348 819 aaPredicted RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms