RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CRTAMO95727 393 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 FGF3P11487 239 aaPredicted RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 UBE2IP63279 158 aaKnown RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 PDE1BQ01064 536 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 TAF1AQ15573 450 aaPredicted RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 TGIF1Q15583 401 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 SEPT7Q16181 437 aaKnown RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 KHDC1Q4VXA5 237 aaKnown RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 MANEAQ5SRI9 462 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 ABRAXAS1Q6UWZ7 409 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 ARHGEF18Q6ZSZ5 1173 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 FAM129CQ86XR2 697 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 ZNF547Q8IVP9 402 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 CCDC110Q8TBZ0 833 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 ZNF398Q8TD17 642 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 APOL2Q9BQE5 337 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 ASPSCR1Q9BZE9 553 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 SLC39A1Q9NY26 324 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 FOXJ2Q9P0K8 574 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 SCHIP1Q9P0W5 487 aaPredicted RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 PCDHGA3Q9Y5H0 932 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 DNMT3AQ9Y6K1 912 aaPredicted RBP16.58■□□□□ 0.24
CLK3-210ENST00000563112 B4E171 279 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 FTCDO95954 541 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 MSH3P20585 1137 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 RPL10P27635 214 aaKnown RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 ADRA1AP35348 466 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 SLC19A1P41440 591 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 TSPAN7P41732 249 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 HALP42357 657 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 RAB15P59190 212 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 COL9A2Q14055 689 aaPredicted RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 GPRC6AQ5T6X5 926 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 AGAP9Q5VTM2 703 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 TMEM220Q6QAJ8 160 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 WASH2PQ6VEQ5 465 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 TMEM26Q6ZUK4 368 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 AMZ2Q86W34 360 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 PLXDC1Q8IUK5 500 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 RBM12BQ8IXT5 1001 aaKnown RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 RNF10Q8N5U6 811 aaKnown RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 DDHD1Q8NEL9 900 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 ART4Q93070 314 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 CXorf40BQ96DE9 158 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 WBP1Q96G27 269 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 ZNF514Q96K75 400 aaPredicted RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 TBL1YQ9BQ87 522 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 GORASP1Q9BQQ3 440 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 DDA1Q9BW61 102 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 TBC1D10AQ9BXI6 508 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 WASH6PQ9NQA3 447 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 POT1Q9NUX5 634 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 SMOXQ9NWM0 555 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 TRIM10Q9UDY6 481 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 FEZ2Q9UHY8 353 aaPredicted RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 PACSIN2Q9UNF0 486 aaPredicted RBP16.57■□□□□ 0.24
CLK3-210ENST00000563112 ARL5AQ9Y689 179 aa16.57■□□□□ 0.24
CLK3-210ENST00000563112 KALRNO60229 2985 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 EFCAB7A8K855 629 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 STMND1H3BQB6 276 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 POP7O75817 140 aaKnown RBP16.56■□□□□ 0.24
CLK3-210ENST00000563112 PRAMEF1O95521 474 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 AMD1P17707 334 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 AKT1P31749 480 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 LONRF2Q1L5Z9 754 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 DCAF12Q5T6F0 453 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 ARHGAP22Q7Z5H3 698 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 C11orf96Q7Z7L8 435 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 RASGEF1AQ8N9B8 481 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 ZSCAN1Q8NBB4 408 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 OR4K2Q8NGD2 314 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 UBE2Q2Q8WVN8 375 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 TEFMQ96QE5 360 aaKnown RBP16.56■□□□□ 0.24
CLK3-210ENST00000563112 ASB8Q9H765 288 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 OCIAD1Q9NX40 245 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 ZNF624Q9P2J8 865 aaPredicted RBP16.56■□□□□ 0.24
CLK3-210ENST00000563112 KLHL3Q9UH77 587 aa16.56■□□□□ 0.24
CLK3-210ENST00000563112 LOC400499M0QZD8 3231 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 PRR19A6NJB7 356 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.55■□□□□ 0.24
CLK3-210ENST00000563112 DDX3YO15523 660 aaKnown RBP16.55■□□□□ 0.24
CLK3-210ENST00000563112 UBXN7O94888 489 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 ATP1A2P50993 1020 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 DRG2P55039 364 aaKnown RBP16.55■□□□□ 0.24
CLK3-210ENST00000563112 GSDMDP57764 484 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 C19orf57Q0VDD7 668 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 PTPRCAPQ14761 206 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 PARP6Q2NL67 630 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 DTX1Q86Y01 620 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 FAM71DQ8N9W8 422 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 TSGA10Q9BZW7 698 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 FKBPLQ9UIM3 349 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 B3GALT1Q9Y5Z6 326 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 BAHCC1Q9P281 2608 aa16.55■□□□□ 0.24
CLK3-210ENST00000563112 PIEZO2Q9H5I5 2752 aa16.54■□□□□ 0.24
CLK3-210ENST00000563112 OR2AG2A6NM03 316 aa16.54■□□□□ 0.24
CLK3-210ENST00000563112 GAPDHSO14556 408 aaPredicted RBP16.54■□□□□ 0.24
CLK3-210ENST00000563112 GPR39O43194 453 aa16.54■□□□□ 0.24
CLK3-210ENST00000563112 PSMD3O43242 534 aa16.54■□□□□ 0.24
CLK3-210ENST00000563112 EFSO43281 561 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms