RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 UBR7Q8N806 425 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 NAT8LQ8N9F0 302 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 WDR48Q8TAF3 677 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 INPP5DQ92835 1189 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 C1orf50Q9BV19 199 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 SCN1AP35498 2009 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 A0A0J9YYE9 177 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 UBXN8O00124 270 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 UBDO15205 165 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 LYPLA1O75608 230 aaPredicted RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 TNFP01375 233 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 TRBC1P01850 177 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 HTRA4P83105 476 aaPredicted RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 TP53BP2Q13625 1128 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 MAPRE2Q15555 327 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 RBM20Q5T481 1227 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 PRPF38BQ5VTL8 546 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 SYT12Q8IV01 421 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 PCYOX1LQ8NBM8 494 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 OR2T3Q8NH03 318 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 ZNF641Q96N77 438 aaPredicted RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 TSGA13Q96PP4 275 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 TRIT1Q9H3H1 467 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 TCF7L2Q9NQB0 619 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 ZNFX1Q9P2E3 1918 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 CXorf49A8MYA2 514 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 C2CD4DB7Z1M9 353 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 HHLA1C9JL84 531 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 GPR39O43194 453 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 PRSS56P0CW18 603 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 THEGLP0DJG4 465 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ADRB3P13945 408 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 DDX5P17844 614 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 HOXC8P31273 242 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 CHI3L1P36222 383 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 GRIA3P42263 894 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 NUDT2P50583 147 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 PLA2G16P53816 162 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ATP6V0D1P61421 351 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 BST1Q10588 318 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 GPR33Q49SQ1 333 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 KIAA0930Q6ICG6 404 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 EXOC3L1Q86VI1 746 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 RALGPS2Q86X27 583 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 C10orf107Q8IVU9 208 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 KIF2BQ8N4N8 673 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 CLHC1Q8NHS4 586 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 SLC44A1Q8WWI5 657 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 IMP4Q96G21 291 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 MYRFLQ96LU7 910 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 XKR8Q9H6D3 395 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TBC1D17Q9HA65 648 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 KCND1Q9NSA2 647 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ZDHHC3Q9NYG2 299 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 PLAGL1Q9UM63 463 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 DTNAQ9Y4J8 743 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 LTBP1Q14766 1721 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 SPAG17Q6Q759 2223 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TM9SF1O15321 606 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ZSCAN9O15535 394 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 CREB1P16220 341 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 SSR2P43308 183 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TOMM20Q15388 145 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 HLA-DQA1Q5Y7H0 255 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ARCQ7LC44 396 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 DSELQ8IZU8 1212 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ANKRD7Q92527 254 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ZNF75CPQ92670 426 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 CENPIQ92674 756 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 MRGPRX2Q96LB1 330 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 MRPL57Q9BQC6 102 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 TDRD1Q9BXT4 1180 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 SLC2A4RGQ9NR83 387 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ARMCX1Q9P291 453 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 MUSKO15146 869 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 DCXO43602 365 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 OR1F1O43749 312 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 AHSGP02765 367 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 LINC00032P0C843 101 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 IL9P15248 144 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ACTN3Q08043 901 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 SIM2Q14190 667 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 CYTH1Q15438 398 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TMEM259Q4ZIN3 620 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 DGKKQ5KSL6 1271 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TSSK4Q6SA08 328 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ZNF621Q6ZSS3 439 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 CYP2U1Q7Z449 544 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TAGAPQ8N103 731 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ZNF473Q8WTR7 871 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 PTCD2Q8WV60 388 aaKnown RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 TSSK3Q96PN8 268 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 TCF12Q99081 682 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 EPN3Q9H201 632 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 ZFHX2Q9C0A1 2572 aaPredicted RBP9.13□□□□□ -0.95
VPS39-205ENST00000562258 A0A0J9YVX5 310 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 RNF103-CHMP3A0A140T963 221 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 C5AR1P21730 350 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 CXCR2P25025 360 aa9.13□□□□□ -0.95
VPS39-205ENST00000562258 GDF5P43026 501 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms