RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	CDON	Q4KMG0	1287 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	FAM69A	Q5T7M9	428 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	ISCA2	Q86U28	154 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	SCML4	Q8N228	414 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	BMPER	Q8N8U9	685 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	HM13	Q8TCT9	377 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	MAGIX	Q9H6Y5	334 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4	□□□□□ -1.77
VPS13C-208	ENST00000559119	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	4	□□□□□ -1.77
VPS13C-208	ENST00000559119	MKLN1	Q9UL63	735 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	YIPF1	Q9Y548	306 aa		4	□□□□□ -1.77
VPS13C-208	ENST00000559119	IGLV7-46	A0A075B6I9	117 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	KANSL1L	A0AUZ9	987 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	TRMU	O75648	421 aa	Known RBP	3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	NADK	O95544	446 aa	Predicted RBP	3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	CNTF	P26441	200 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	WNT5A	P41221	380 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	SLC6A12	P48065	614 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	CTSC	P53634	463 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	ZNF805	Q5CZA5	627 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	NSUN5P2	Q63ZY6	315 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	NOL8	Q76FK4	1167 aa	Known RBP	3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	FASTKD5	Q7L8L6	764 aa	Known RBP	3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	C1orf52	Q8N6N3	182 aa	Known RBP	3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	ZNF611	Q8N823	705 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	HVCN1	Q96D96	273 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	GIMAP5	Q96F15	307 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	ZNF300	Q96RE9	604 aa	Predicted RBP	3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	RABGAP1	Q9Y3P9	1069 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	COMMD10	Q9Y6G5	202 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	CAPN7	Q9Y6W3	813 aa		3.99	□□□□□ -1.77
VPS13C-208	ENST00000559119	TNFSF14	O43557	240 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	CSPG5	O95196	566 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	HAL	P42357	657 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	PTP4A2	Q12974	167 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	PRICKLE4	Q2TBC4	344 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	PTOV1	Q86YD1	416 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	OR2T12	Q8NG77	320 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	RNF125	Q96EQ8	232 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	ARPC5L	Q9BPX5	153 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	RTP3	Q9BQQ7	232 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	HERPUD2	Q9BSE4	406 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	KRTAP4-3	Q9BYR4	195 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	SLC25A18	Q9H1K4	315 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	PIGM	Q9H3S5	423 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	COQ3	Q9NZJ6	369 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	ABI3	Q9P2A4	366 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119	CLIC4	Q9Y696	253 aa		3.98	□□□□□ -1.77
VPS13C-208	ENST00000559119		A0A087WW49	117 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	GPR137B	O60478	399 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	ZFAND5	O76080	213 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	NGF	P01138	241 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	NFKBIA	P25963	317 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	MMP15	P51511	669 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	CD81	P60033	236 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	SNAI3	Q3KNW1	292 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	RAB6C	Q53S08	254 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	XKR6	Q5GH73	641 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	DOK6	Q6PKX4	331 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	GCSAM	Q8N6F7	178 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	SLC38A9	Q8NBW4	561 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	NFKBID	Q8NI38	313 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	ZNRF4	Q8WWF5	429 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	SMPDL3B	Q92485	455 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	PRAC1	Q96KF2	57 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	SYT15	Q9BQS2	421 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	FGFBP2	Q9BYJ0	223 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	TMEM39B	Q9GZU3	492 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	RAB6C	Q9H0N0	254 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	DLGAP2	Q9P1A6	1054 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	ASIC3	Q9UHC3	531 aa		3.97	□□□□□ -1.77
VPS13C-208	ENST00000559119	IGHV4-4	A0A075B6R2	117 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	PLK4	O00444	970 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	ATP2A1	O14983	1001 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	EDN1	P05305	212 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	TRIM49	P0CI25	452 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	TRIM49C	P0CI26	452 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	ACADS	P16219	412 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	CEBPB	P17676	345 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	CEACAM8	P31997	349 aa	Predicted RBP	3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	F2RL1	P55085	397 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	ZBED6	P86452	979 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	ENPP2	Q13822	863 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	LCE3A	Q5TA76	89 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	BSPRY	Q5W0U4	402 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	CDC73	Q6P1J9	531 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	PLD3	Q8IV08	490 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	RASGEF1C	Q8N431	466 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	NGEF	Q8N5V2	710 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	SLC47A1	Q96FL8	570 aa		3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	FAM120C	Q9NX05	1096 aa	Known RBP	3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	CWC15	Q9P013	229 aa	Known RBP	3.96	□□□□□ -1.78
VPS13C-208	ENST00000559119	CCDC196	A0A1B0GTZ2	297 aa		3.95	□□□□□ -1.78
VPS13C-208	ENST00000559119		A0A1W2PNU3	283 aa	Predicted RBP	3.95	□□□□□ -1.78
VPS13C-208	ENST00000559119	PIP5K1C	O60331	668 aa		3.95	□□□□□ -1.78
VPS13C-208	ENST00000559119	SRSF10	O75494	262 aa	Known RBP	3.95	□□□□□ -1.78
VPS13C-208	ENST00000559119	MOCS3	O95396	460 aa		3.95	□□□□□ -1.78
VPS13C-208	ENST00000559119	F9	P00740	461 aa		3.95	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms