RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OR2A12Q8NGT7 310 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ITFG1Q8TB96 612 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 SGF29Q96ES7 293 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ASB16Q96NS5 453 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 PANX3Q96QZ0 392 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ATOH8Q96SQ7 321 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 EBF4Q9BQW3 602 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 C1QTNF3Q9BXJ4 246 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 IL26Q9NPH9 171 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 DNAAF2Q9NVR5 837 aaKnown RBP12.51□□□□□ -0.41
SHMT2-229ENST00000557348 DMTF1Q9Y222 760 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CEP290O15078 2479 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 NUP210Q8TEM1 1887 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ANKRD36A6QL64 1941 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 GRXCR1A8MXD5 290 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 H0YJX3 145 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 QSOX1O00391 747 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 MAP3K13O43283 966 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 UGT2B4P06133 528 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CBSLP0DN79 551 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 GFAPP14136 432 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 BPIP17213 487 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 VCLP18206 1134 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 DGKAP23743 735 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 VIPR1P32241 457 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CBSP35520 551 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 MAGEA10P43363 369 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-229ENST00000557348 LRRC66Q68CR7 880 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CRTC1Q6UUV9 634 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 TMC5Q6UXY8 1006 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 TMEM184AQ6ZMB5 413 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 MACC1Q6ZN28 852 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 MAVSQ7Z434 540 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ADGRD2Q7Z7M1 963 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 KBTBD2Q8IY47 623 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 LSMEM2Q8N112 164 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 NXPE1Q8N323 547 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 FBXO39Q8N4B4 442 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 CD200R1Q8TD46 325 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 FRS2Q8WU20 508 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 PTERQ96BW5 349 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 EID2BQ96D98 161 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 BRD9Q9H8M2 597 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 ZDHHC3Q9NYG2 299 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 GTSE1Q9NYZ3 720 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 PCDH10Q9P2E7 1040 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 IL36AQ9UHA7 158 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 SLC7A8Q9UHI5 535 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 YBX2Q9Y2T7 364 aaKnown RBP12.51□□□□□ -0.41
SHMT2-229ENST00000557348 MED16Q9Y2X0 877 aa12.51□□□□□ -0.41
SHMT2-229ENST00000557348 NPIPB15A6NHN6 443 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-229ENST00000557348 UPK3BL1B0FP48 263 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 UPK3BL2E5RIL1 263 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 KLK8O60259 260 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 CISD3P0C7P0 127 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 UBTFL6P0CB48 400 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-229ENST00000557348 XPAP23025 273 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-229ENST00000557348 PGGT1BP53609 377 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 ZFP1Q6P2D0 407 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 PGM2L1Q6PCE3 622 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 SPRED2Q7Z698 418 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 GPR149Q86SP6 731 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 TTC7BQ86TV6 843 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 CUZD1Q86UP6 607 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 CPA6Q8N4T0 437 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 ICA1LQ8NDH6 482 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 RBM15BQ8NDT2 890 aaKnown RBP12.5□□□□□ -0.41
SHMT2-229ENST00000557348 CEP70Q8NHQ1 597 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 ACTRT2Q8TDY3 377 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 TIFAQ96CG3 184 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 MAELQ96JY0 434 aaKnown RBP12.5□□□□□ -0.41
SHMT2-229ENST00000557348 MRGPRX3Q96LB0 322 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 CIPCQ9C0C6 399 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 GSTO2Q9H4Y5 243 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 ZNF696Q9H7X3 374 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 SLC28A3Q9HAS3 691 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 LATS2Q9NRM7 1088 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 SMOXQ9NWM0 555 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 NUDT4Q9NZJ9 180 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 DEC1Q9P2X7 70 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 SLCO3A1Q9UIG8 710 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 ZDHHC2Q9UIJ5 367 aa12.5□□□□□ -0.41
SHMT2-229ENST00000557348 TNPO3Q9Y5L0 923 aaKnown RBP12.5□□□□□ -0.41
SHMT2-229ENST00000557348 SUPT3HB4E1H0 165 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 CFAP99D6REC4 459 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 H3BNX3 289 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 BTN3A1O00481 513 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 GAPDHSO14556 408 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 KPNA5O15131 536 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 GRID2O43424 1007 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 BNIP3LO60238 219 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 SNX2O60749 519 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 NIPSNAP2O75323 286 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 SUPT3HO75486 399 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 SUPT7LO94864 414 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 TNFAIP8O95379 198 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 MLYCDO95822 493 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 PRNPP04156 253 aa12.49□□□□□ -0.41
SHMT2-229ENST00000557348 S100BP04271 92 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-229ENST00000557348 FGF4P08620 206 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms