RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GATAD2AQ86YP4 633 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 SLC25A45Q8N413 288 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 MINDY1Q8N5J2 469 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 UHMK1Q8TAS1 419 aaKnown RBP12.64□□□□□ -0.39
SHMT2-227ENST00000557269 AENQ8WTP8 325 aaKnown RBP12.64□□□□□ -0.39
SHMT2-227ENST00000557269 TTC25Q96NG3 672 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 BIRC8Q96P09 236 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 OR2M4Q96R27 311 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 ZDHHC5Q9C0B5 715 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 GULP1Q9UBP9 304 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 APOBEC3BQ9UH17 382 aaKnown RBP12.64□□□□□ -0.39
SHMT2-227ENST00000557269 RABGEF1Q9UJ41 708 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 FRYLO94915 3013 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 UBA6A0AVT1 1052 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 GDF9O60383 454 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 POP7O75817 140 aaKnown RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 PIAS2O75928 621 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 GIMD1P0DJR0 217 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 RALBP11234 206 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 ACP5P13686 325 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 DGKAP23743 735 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 AK4P27144 223 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 EPHA8P29322 1005 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 FMO4P31512 558 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 NSG1P42857 185 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 LEPRP48357 1165 aaKnown RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 EIF3BP55884 814 aaKnown RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 CTBSQ01459 385 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 GTF2H3Q13889 308 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 UAP1Q16222 522 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 KBTBD12Q3ZCT8 623 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 BCL7AQ4VC05 210 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 PRRT3Q5FWE3 981 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 IL27RAQ6UWB1 636 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 CHST15Q7LFX5 561 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 LRRTM4Q86VH4 590 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 GALNT13Q8IUC8 556 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 TRAPPC5Q8IUR0 188 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 LMNTD2Q8IXW0 634 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 KRT222Q8N1A0 295 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 ZNF548Q8NEK5 533 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 LKAAEAR1Q8TD35 194 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 CALML6Q8TD86 181 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 LMX1AQ8TE12 382 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 HEXDCQ8WVB3 486 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 TCF12Q99081 682 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 TTC1Q99614 292 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 FUT8Q9BYC5 575 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 SLC13A1Q9BZW2 595 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 ZCCHC2Q9C0B9 1178 aaKnown RBP12.63□□□□□ -0.39
SHMT2-227ENST00000557269 RMI1Q9H9A7 625 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 CACNA1EQ15878 2313 aa12.63□□□□□ -0.39
SHMT2-227ENST00000557269 RALGAPA1Q6GYQ0 2036 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 KNL1Q8NG31 2342 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 PRR19A6NJB7 356 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 GPR89AB7ZAQ6 455 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 CFAP99D6REC4 459 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 PRMT5O14744 637 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 KMOO15229 486 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 CTIFO43310 598 aaKnown RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 RIPK2O43353 540 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 SPAG6O75602 509 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 FAM155BO75949 473 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 CER1O95813 267 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 GPR89BP0CG08 455 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ZNF7P17097 686 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ITGB6P18564 788 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 PBLDP30039 288 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 STX2P32856 288 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ARRB1P49407 418 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 PRLHRP49683 370 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 HNRNPKP61978 463 aaKnown RBP eCLIP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ZNF658BQ4V348 819 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ZNF449Q6P9G9 518 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 NAPRTQ6XQN6 538 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 FAM83HQ6ZRV2 1179 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 TRMT10CQ7L0Y3 403 aaKnown RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 STRA8Q7Z7C7 330 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 SFTPA2Q8IWL1 248 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 LILRA3Q8N6C8 439 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ACVR1CQ8NER5 493 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 GPBAR1Q8TDU6 330 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 SAP25Q8TEE9 199 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 NDNQ99608 321 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 MCMBPQ9BTE3 642 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 EDEM2Q9BV94 578 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 INTS10Q9NVR2 710 aaKnown RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 DNAAF2Q9NVR5 837 aaKnown RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 TRNAU1APQ9NX07 287 aaKnown RBP12.62□□□□□ -0.39
SHMT2-227ENST00000557269 ZFATQ9P243 1243 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 GALPQ9UBC7 116 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 GPR34Q9UPC5 381 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 KCNK6Q9Y257 313 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 MED16Q9Y2X0 877 aa12.62□□□□□ -0.39
SHMT2-227ENST00000557269 H3BM21 787 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 YY2O15391 372 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 AQP9O43315 295 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 DFNA5O60443 496 aa12.61□□□□□ -0.39
SHMT2-227ENST00000557269 GFRA3O60609 400 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms