RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 NOD2Q9HC29 1040 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 MRPL47Q9HD33 250 aaKnown RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 PRDM8Q9NQV8 689 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 DNAJB12Q9NXW2 375 aaKnown RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TAAR2Q9P1P5 351 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 PDP2Q9P2J9 529 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 KCND3Q9UK17 655 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TLK1Q9UKI8 766 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 OTOGQ6ZRI0 2925 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 SLC35F4A4IF30 521 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 NPIPB15A6NHN6 443 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 MKRN2OSH3BPM6 223 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 H3BRJ5 948 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 DDX3XO00571 662 aaKnown RBP eCLIP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 STK17BO94768 372 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 PGLSO95336 258 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 SOD1P00441 154 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 CPP00450 1065 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 CYP2A6P11509 494 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 IL1R2P27930 398 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 SERPINB6P35237 376 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 ARL4AP40617 200 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 MAPK9P45984 424 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 FASLGP48023 281 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 TRAF2Q12933 501 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 MRPL49Q13405 166 aaKnown RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF235Q14590 738 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 NADK2Q4G0N4 442 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 FIGNQ5HY92 759 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 E4F1Q66K89 784 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 DENND2CQ68D51 928 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 DOK6Q6PKX4 331 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 TMCO3Q6UWJ1 677 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 ADAMTSL4Q6UY14 1074 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 Q6ZVL8 140 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF765Q7L2R6 523 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 HSD11B1LQ7Z5J1 315 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 NAGSQ8N159 534 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 BBS5Q8N3I7 341 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 BMPERQ8N8U9 685 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 OR4D9Q8NGE8 314 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 FAM71BQ8TC56 605 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 PDCD6IPQ8WUM4 868 aaKnown RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 CSPG4P5Q96PW8 444 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 HAUS4Q9H6D7 363 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 RCOR3Q9P2K3 495 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 CNOT8Q9UFF9 292 aaKnown RBP9.92□□□□□ -0.82
SCFD1-220ENST00000556486 SHANK1Q9Y566 2161 aa9.92□□□□□ -0.82
SCFD1-220ENST00000556486 CDC14CA4D256 554 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 GOLGA6CA6NDK9 693 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 GOLGA6BA6NDN3 693 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 TMCO5BA8MYB1 307 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 KATNA1O75449 491 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ASMTLO95671 621 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 PYGLP06737 847 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 GOLGA6DP0CG33 693 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF30P17039 623 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 MAP4P27816 1152 aaKnown RBP9.91□□□□□ -0.82
SCFD1-220ENST00000556486 TNFRSF8P28908 595 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 DLSTP36957 453 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ADCY8P40145 1251 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ETV3P41162 512 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 CTBSQ01459 385 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 PTSQ03393 145 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 LRP8Q14114 963 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 PIGHQ14442 188 aaPredicted RBP9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ASIC2Q16515 512 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 MARC1Q5VT66 337 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 USP45Q70EL2 814 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 CCDC13Q8IYE1 715 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 PAF1Q8N7H5 531 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 PIH1D2Q8WWB5 315 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF653Q96CK0 615 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 GBP4Q96PP9 640 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 SPRY4Q9C004 299 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 NAT10Q9H0A0 1025 aaKnown RBP9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF768Q9H5H4 540 aaKnown RBP9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ETNK2Q9NVF9 386 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 GOLGA6AQ9NYA3 693 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 AMACRQ9UHK6 382 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 SUFUQ9UMX1 484 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 RP1L1Q8IWN7 2480 aaPredicted RBP9.91□□□□□ -0.82
SCFD1-220ENST00000556486 ESPL1Q14674 2120 aa9.91□□□□□ -0.82
SCFD1-220ENST00000556486 A0A0J9YYE9 177 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 B4E171 279 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 RFPL1O75677 317 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 MBD3O95983 291 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 TRBC1P01850 177 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 S100BP04271 92 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-220ENST00000556486 TCF4P15884 667 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF28P17035 718 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 AMPD1P23109 780 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 IL4RP24394 825 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 TSPAN7P41732 249 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 STAT5AP42229 794 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 MMP13P45452 471 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 SLC25A11Q02978 314 aaKnown RBP9.9□□□□□ -0.82
SCFD1-220ENST00000556486 CHAF1BQ13112 559 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 PYCR3Q53H96 274 aa9.9□□□□□ -0.82
SCFD1-220ENST00000556486 CCDC183Q5T5S1 534 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms