RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PCDH12Q9NPG4 1184 aa14.35□□□□□ -0.11
SHMT2-208ENST00000553868 IL1RAPL1Q9NZN1 696 aa14.35□□□□□ -0.11
SHMT2-208ENST00000553868 B4GALT6Q9UBX8 382 aa14.35□□□□□ -0.11
SHMT2-208ENST00000553868 GGT7Q9UJ14 662 aa14.35□□□□□ -0.11
SHMT2-208ENST00000553868 CORO1CQ9ULV4 474 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-208ENST00000553868 METTL12A8MUP2 240 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 TRIM49D1C9J1S8 452 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 GOLGA8TH3BQL2 631 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 PSMD11O00231 422 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 UGT1A9O60656 530 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CLDN7O95471 211 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 ITGA2BP08514 1039 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 NR1D1P20393 614 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 ITGALP20701 1170 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 C5AR1P21730 350 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 MC4RP32245 332 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 SPAM1P38567 509 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 SLC1A2P43004 574 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CD151P48509 253 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 STC1P52823 247 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CACNG1Q06432 222 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 NUMA1Q14980 2115 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CST6Q15828 149 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 LYPLAL1Q5VWZ2 237 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CERS6Q6ZMG9 384 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 TIFABQ6ZNK6 161 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 GATAD2AQ86YP4 633 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CILP2Q8IUL8 1156 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 SRRM1Q8IYB3 904 aaKnown RBP14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CYP4X1Q8N118 509 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 ARRDC3Q96B67 414 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 SMIM14Q96QK8 99 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 CNOT10Q9H9A5 744 aaKnown RBP14.34□□□□□ -0.11
SHMT2-208ENST00000553868 UGT1A7Q9HAW7 530 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 UGT1A10Q9HAW8 530 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 UGT1A8Q9HAW9 530 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 INTS10Q9NVR2 710 aaKnown RBP14.34□□□□□ -0.11
SHMT2-208ENST00000553868 FKBPLQ9UIM3 349 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 LRRK2Q5S007 2527 aa14.34□□□□□ -0.11
SHMT2-208ENST00000553868 ANKRD36A6QL64 1941 aa14.33□□□□□ -0.11
SHMT2-208ENST00000553868 TERTO14746 1132 aaKnown RBP14.33□□□□□ -0.12
SHMT2-208ENST00000553868 RFPL3O75679 317 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 FAM155BO75949 473 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 GP1BBP13224 206 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 ADRB3P13945 408 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 HPDP32754 393 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-208ENST00000553868 MMP12P39900 470 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 TTPAP49638 278 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 SERPINB8P50452 374 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 PPP2R2AP63151 447 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 ZBTB16Q05516 673 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 CTBP1Q13363 440 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 PTPRCAPQ14761 206 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 POM121L1PQ3SYA9 428 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 GPR33Q49SQ1 333 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 ZRANB3Q5FWF4 1079 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 C6orf132Q5T0Z8 1188 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 MROH9Q5TGP6 573 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 TSPAN33Q86UF1 283 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 EXOC3L1Q86VI1 746 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 ZC3HC1Q86WB0 502 aaKnown RBP14.33□□□□□ -0.12
SHMT2-208ENST00000553868 ACMSDQ8TDX5 336 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 SNX19Q92543 992 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 VPS39Q96JC1 886 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 CABS1Q96KC9 395 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 PLEKHG4BQ96PX9 1271 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 BPIFA1Q9NP55 256 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 SSU72Q9NP77 194 aaKnown RBP14.33□□□□□ -0.12
SHMT2-208ENST00000553868 SLC17A6Q9P2U8 582 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 SARDHQ9UL12 918 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 SCML1Q9UN30 329 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 ANKRD6Q9Y2G4 727 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 PSAT1Q9Y617 370 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 CREBBPQ92793 2442 aa14.33□□□□□ -0.12
SHMT2-208ENST00000553868 UTP20O75691 2785 aaKnown RBP14.32□□□□□ -0.12
SHMT2-208ENST00000553868 GLYATL1P3A0A0U1RQE8 302 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 A8MX80 341 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 CCL22O00626 93 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 NEMP1O14524 444 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 PCDHGA12O60330 932 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 NDUFS3O75489 264 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 DNTTP04053 509 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 ELFN1P0C7U0 828 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 MYF5P13349 255 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 BRAFP15056 766 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 LHCGRP22888 699 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 FOXN2P32314 431 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 LEPRP48357 1165 aaKnown RBP14.32□□□□□ -0.12
SHMT2-208ENST00000553868 SPINT3P49223 89 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 CCT8P50990 548 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 DCDC1P59894 354 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 PTPRRQ15256 657 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 TYSND1Q2T9J0 566 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 PRAMEF14Q5SWL7 426 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 BROXQ5VW32 411 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 CACUL1Q86Y37 369 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 DENND6AQ8IWF6 608 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 NRSN1Q8IZ57 195 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 ZNF248Q8NDW4 579 aa14.32□□□□□ -0.12
SHMT2-208ENST00000553868 CADM4Q8NFZ8 388 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms