RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 MLYCDO95822 493 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 LMNAP02545 664 aaKnown RBP26■■□□□ 1.75
CCDC88C-205ENST00000553403 DCDC1P59894 354 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 TGFBIQ15582 683 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 RARS2Q5T160 578 aaKnown RBP26■■□□□ 1.75
CCDC88C-205ENST00000553403 CLEC6AQ6EIG7 209 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 CLDN19Q8N6F1 224 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 PANX3Q96QZ0 392 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 THTPAQ9BU02 230 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 PCTPQ9UKL6 214 aa26■■□□□ 1.75
CCDC88C-205ENST00000553403 G3BP2Q9UN86 482 aaKnown RBP26■■□□□ 1.75
CCDC88C-205ENST00000553403 COPG1Q9Y678 874 aaKnown RBP26■■□□□ 1.75
CCDC88C-205ENST00000553403 CTSLP07711 333 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 GM2AP17900 193 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 SLC25A3Q00325 362 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 ZRSR2Q15696 482 aaKnown RBP25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 TTLL9Q3SXZ7 439 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 RFLNAQ6ZTI6 216 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 C19orf60Q96EN9 201 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 NKX2-4Q9H2Z4 354 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 NFKBIL1Q9UBC1 381 aaPredicted RBP25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 HEPACAM2A8MVW5 462 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 CBSLP0DN79 551 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 ITGB6P18564 788 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 CBSP35520 551 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 CDC16Q13042 620 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 CUL3Q13618 768 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 CYLC2Q14093 348 aaPredicted RBP25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 PDGFRLQ15198 375 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 GAB4Q2WGN9 574 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 SBSNQ6UWP8 590 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 FRA10AC1Q70Z53 315 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 ULK2Q8IYT8 1036 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 GDPD5Q8WTR4 605 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 PBX4Q9BYU1 374 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 RNPEPL1Q9HAU8 725 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 PCDH12Q9NPG4 1184 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 SMOXQ9NWM0 555 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 THG1LQ9NWX6 298 aaKnown RBP25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 KCTD5Q9NXV2 234 aa25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 TNPO3Q9Y5L0 923 aaKnown RBP25.99■■□□□ 1.75
CCDC88C-205ENST00000553403 NCF1BA6NI72 391 aaPredicted RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 NCF1CA8MVU1 366 aaPredicted RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 RAD51BO15315 384 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 CIB2O75838 187 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 NCF1P14598 390 aaPredicted RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 ITGAXP20702 1163 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 SQLEQ14534 574 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 LRRC73Q5JTD7 316 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 CYHR1Q6ZMK1 362 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 LARP4Q71RC2 724 aaKnown RBP eCLIP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 DPPA4Q7L190 304 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 EFL1Q7Z2Z2 1120 aaKnown RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 NET1Q7Z628 596 aaPredicted RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 GPR149Q86SP6 731 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 SNX32Q86XE0 403 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 OR56A4Q8NGH8 313 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 FAM83CQ9BQN1 747 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 NUSAP1Q9BXS6 441 aaKnown RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 FAM126AQ9BYI3 521 aaPredicted RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 EBF3Q9H4W6 596 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 CD248Q9HCU0 757 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 DNAJC15Q9Y5T4 150 aa25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 SEC23IPQ9Y6Y8 1000 aaKnown RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 LAMA2P24043 3122 aaKnown RBP25.98■■□□□ 1.75
CCDC88C-205ENST00000553403 PPP6CO00743 305 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 UBDO15205 165 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 GPC4O75487 556 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 S100BP04271 92 aaPredicted RBP25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 AGTR2P50052 363 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 ATP4BP51164 291 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 EIF4HQ15056 248 aaKnown RBP25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 PCBP2Q15366 365 aaKnown RBP eCLIP25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 ACSBG2Q5FVE4 666 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 ENDOVQ8N8Q3 282 aaKnown RBP25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 CFAP61Q8NHU2 1237 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 TWIST2Q8WVJ9 160 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 DEC1Q9P2X7 70 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 MSRAQ9UJ68 235 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 OARD1Q9Y530 152 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 C2orf16Q68DN1 1984 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 PLXNB3Q9ULL4 1909 aa25.97■■□□□ 1.75
CCDC88C-205ENST00000553403 A0A088AWK7 358 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 EIF3FO00303 357 aaPredicted RBP25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 OR56A5P0C7T3 313 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 XPAP23025 273 aaPredicted RBP25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 B4GALNT1Q00973 533 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 KPNB1Q14974 876 aaKnown RBP25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 C6orf163Q5TEZ5 329 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 HSD11B1LQ7Z5J1 315 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 PDPRQ8NCN5 879 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 HGH1Q9BTY7 390 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 FAM83DQ9H4H8 585 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 MTG2Q9H4K7 406 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 SEMA4BQ9NPR2 832 aaPredicted RBP25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 C16orf96A6NNT2 1141 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 ENTPD5O75356 428 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 SLC6A11P48066 632 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 PPP1R3AQ16821 1122 aa25.96■■□□□ 1.75
CCDC88C-205ENST00000553403 TRMT5Q32P41 509 aaKnown RBP25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms