RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 K7ERQ8 282 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 DFNA5O60443 496 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 NDST3O95803 873 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 FGF1P05230 155 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 RPS9P46781 194 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 IL1RL1Q01638 556 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 GNA12Q03113 381 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 USP41Q3LFD5 358 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 CYBRD1Q53TN4 286 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 DTWD1Q8N5C7 304 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 MINDY1Q8N5J2 469 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 UHRF1Q96T88 793 aaPredicted RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 FBXO44Q9H4M3 255 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 ABCD2Q9UBJ2 740 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 FAM8A1Q9UBU6 413 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 PCDHB8Q9UN66 801 aa14.88□□□□□ -0.03
USP28-214ENST00000545540 DICER1Q9UPY3 1922 aaKnown RBP14.88□□□□□ -0.03
USP28-214ENST00000545540 H0Y626 953 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 TRIM16O95361 564 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 ZBTB11O95625 1053 aaPredicted RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 FGF4P08620 206 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 UGT1A1P22309 533 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 UGT1A4P22310 534 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 DNAJB1P25685 340 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 UGT1A3P35503 534 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 UGT1A5P35504 534 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 DSC3Q14574 896 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 ABRAXAS2Q15018 415 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 AARS2Q5JTZ9 985 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 CTSL3PQ5NE16 218 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 RTP2Q5QGT7 225 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 OGFOD2Q6N063 350 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 ENPP6Q6UWR7 440 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 FAM151BQ6UXP7 276 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 THAP11Q96EK4 314 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 THUMPD3Q9BV44 507 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 NPLQ9BXD5 320 aaPredicted RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 IKZF5Q9H5V7 419 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 SPC25Q9HBM1 224 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 AFF4Q9UHB7 1163 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 MYO7AQ13402 2215 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 SHMT2P34897 504 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 GALNT1Q10472 559 aaPredicted RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 SLC36A3Q495N2 470 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 GPRIN3Q6ZVF9 776 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 ANKRD46Q86W74 232 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 FAM126BQ8IXS8 530 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 KRTCAP2Q8N6L1 136 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 LINC01599Q8WXQ3 324 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 TOP1MTQ969P6 601 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 GFM2Q969S9 779 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 TFB2MQ9H5Q4 396 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 SCUBE2Q9NQ36 999 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 FCF1Q9Y324 198 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 RAI2Q9Y5P3 530 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 GREB1Q4ZG55 1949 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 DOCK4Q8N1I0 1966 aa14.87□□□□□ -0.03
USP28-214ENST00000545540 TDRD15B5MCY1 1934 aaKnown RBP14.87□□□□□ -0.03
USP28-214ENST00000545540 IQCA1LA6NCM1 817 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 ZNF189O75820 626 aaPredicted RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 LDLRP01130 860 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 KLKB1P03952 638 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 HNRNPCP07910 306 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP28-214ENST00000545540 SLC2A4P14672 509 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 HLA-DPA1P20036 260 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 RFC2P35250 354 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 TRAF2Q12933 501 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 TRIP4Q15650 581 aaPredicted RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 ARMC12Q5T9G4 340 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 LYSMD3Q7Z3D4 306 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 GALNT10Q86SR1 603 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 ERI1Q8IV48 349 aaKnown RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 OR10A6Q8NH74 314 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 ZNF599Q96NL3 588 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 TLR8Q9NR97 1041 aaKnown RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 TMCO1Q9UM00 188 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 VPS4AQ9UN37 437 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 MYO16Q9Y6X6 1858 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 PTGES3LE9PB15 166 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 ARVCFO00192 962 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 STX7O15400 261 aaKnown RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 INSIG1O15503 277 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 TSPAN12O95859 305 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 TGFBIQ15582 683 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 ATP6AP1LQ52LC2 224 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 FEM1CQ96JP0 617 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 C17orf80Q9BSJ5 609 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 DGCR6LQ9BY27 220 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 PRM3Q9NNZ6 103 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 AIG1Q9NVV5 245 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 SMPD3Q9NY59 655 aaPredicted RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 UBA2Q9UBT2 640 aaPredicted RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 INVSQ9Y283 1065 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 DGKBQ9Y6T7 804 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 A0A087WXM4 84 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 WASH4PA8MWX3 477 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 SH3BGRLO75368 114 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 ESRRBO95718 433 aa14.86□□□□□ -0.03
USP28-214ENST00000545540 PKMP14618 531 aaKnown RBP14.86□□□□□ -0.03
USP28-214ENST00000545540 MATN1P21941 496 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms