RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LOC100653049A0A140TA62 436 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 G3V2L1 256 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 H0YC42 278 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 GOLGA8SH3BPF8 625 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PIK3R2O00459 728 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SOX1O00570 391 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 PIRO00625 290 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 KRT34O76011 436 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ALBP02768 609 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PGAM1P18669 254 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PSMA4P25789 261 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 RPL9P32969 192 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 CSTF2P33240 577 aaKnown RBP eCLIP5.22□□□□□ -1.57
USP28-213ENST00000544967 GMPRP36959 345 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 GRIA3P42263 894 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 RPS5P46782 204 aaKnown RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 PLA2G16P53816 162 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MLLT10P55197 1068 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 DNAJB13P59910 316 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CD300CQ08708 224 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SLC10A2Q12908 348 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 BAMBIQ13145 260 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CUL2Q13617 745 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PLA2G4EQ3MJ16 856 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 SPANXN3Q5MJ09 141 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 LIPMQ5VYY2 423 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TTC23Q5W5X9 447 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 PNCKQ6P2M8 343 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MINDY1Q8N5J2 469 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TAS1R2Q8TE23 839 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CPA5Q8WXQ8 436 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ADAM2Q99965 735 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CBWD1Q9BRT8 395 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 MTMR12Q9C0I1 747 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 ATP13A2Q9NQ11 1180 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 C20orf96Q9NUD7 363 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 CACNA2D2Q9NY47 1150 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 USE1Q9NZ43 259 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.22□□□□□ -1.57
USP28-213ENST00000544967 HSPE1-MOB4S4R3N1 261 aa5.22□□□□□ -1.57
USP28-213ENST00000544967 TYW5A2RUC4 315 aaKnown RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 ARL5CA6NH57 179 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 PSMD11O00231 422 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 GRID2O43424 1007 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 SRP72O76094 671 aaKnown RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 ARHGEF15O94989 841 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 FYNP06241 537 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CDH1P12830 882 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 LAG3P18627 525 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CRHBPP24387 322 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 GNA15P30679 374 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 ARRB2P32121 409 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 RPS9P46781 194 aaKnown RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 DGKGP49619 791 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 NDST1P52848 882 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CCL23P55773 120 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CXCR4P61073 352 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CD83Q01151 205 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 IFITM3Q01628 133 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 TNK2Q07912 1038 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 OCLNQ16625 522 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 TYSND1Q2T9J0 566 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 GFOD2Q3B7J2 385 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 SLC10A6Q3KNW5 377 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CCDC58Q4VC31 144 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 EEF1DP3Q658K8 133 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CRTC3Q6UUV7 619 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 ZCCHC23Q6ZST2 131 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 ZNF767PQ75MW2 155 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 ZNF534Q76KX8 674 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 DDX53Q86TM3 631 aaKnown RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 LYSMD2Q8IV50 215 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 GPD1LQ8N335 351 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 FAM109AQ8N4B1 249 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 COLGALT1Q8NBJ5 622 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 DYNC2LI1Q8TCX1 351 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CAPSLQ8WWF8 208 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 RADILQ96JH8 1075 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 PKMYT1Q99640 499 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 CIB1Q99828 191 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 VN1R3Q9BXE9 311 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 MKRN2Q9H000 416 aaKnown RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 RNF38Q9H0F5 515 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 FAM49AQ9H0Q0 323 aaPredicted RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 TTYH1Q9H313 450 aaPredicted RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 SNX25Q9H3E2 840 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 TRIT1Q9H3H1 467 aaKnown RBP5.21□□□□□ -1.57
USP28-213ENST00000544967 ASNSD1Q9NWL6 643 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 FBXO5Q9UKT4 447 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 ST14Q9Y5Y6 855 aa5.21□□□□□ -1.57
USP28-213ENST00000544967 ANAPC1Q9H1A4 1944 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 DHRS12A0PJE2 317 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CLDN24A6NM45 220 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 ALG1L2C9J202 215 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 F5H423 210 aaPredicted RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 K7ERI5 159 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CDK2AP1O14519 115 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TPP1O14773 563 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SLC16A4O15374 487 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 B4GALT3O60512 393 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms