RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TCP10LQ8TDR4 215 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 DDI1Q8WTU0 396 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.32□□□□□ -1.084e-6■■□□□ 14.1
CHD4-208ENST00000540960 ISG20Q96AZ6 181 aaKnown RBP8.32□□□□□ -1.08
CHD4-208ENST00000540960 CCDC126Q96EE4 140 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 SEC16BQ96JE7 1060 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 MRGPRX2Q96LB1 330 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 ELF4Q99607 663 aaPredicted RBP8.32□□□□□ -1.08
CHD4-208ENST00000540960 TRIM55Q9BYV6 548 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 RNF38Q9H0F5 515 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 MANSC1Q9H8J5 431 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 CFAP97Q9P2B7 532 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.32□□□□□ -1.08
CHD4-208ENST00000540960 COMMD10Q9Y6G5 202 aa8.32□□□□□ -1.08
CHD4-208ENST00000540960 A0A1W2PPM1 405 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 PRRT4C9JH25 899 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 HNRNPCL1O60812 293 aaKnown RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 SOCS5O75159 536 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 SPAG7O75391 227 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 RFPL1O75677 317 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 IGSF6O95976 241 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 C1QAP02745 245 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 DHRS4L1P0CG22 281 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ERVK-10P10266 1014 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 IRF1P10914 325 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 OGNP20774 298 aaKnown RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 GNLYP22749 145 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 HOXD9P28356 352 aaPredicted RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 RBMS1P29558 406 aaKnown RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 SLC6A4P31645 630 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ACSL1P33121 698 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 SERPINB4P48594 390 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 SEC24CP53992 1094 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 RPS24P62847 133 aaKnown RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 E2F1Q01094 437 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 SEPT6Q14141 434 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 TAF1AQ15573 450 aaPredicted RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 PROX2Q3B8N5 592 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 HSP90AA5PQ58FG0 334 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ARTNQ5T4W7 220 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 LYPLAL1Q5VWZ2 237 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 DENND5AQ6IQ26 1287 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 RFWD3Q6PCD5 774 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 TRMT10BQ6PF06 316 aaKnown RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 FOXR1Q6PIV2 292 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ARHGAP36Q6ZRI8 547 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 NUDCD3Q8IVD9 361 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 TP53INP2Q8IXH6 220 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 PLPP6Q8IY26 295 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 CFAP52Q8N1V2 620 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 TERB1Q8NA31 727 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 CCDC63Q8NA47 563 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 GPR150Q8NGU9 434 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 SPATA22Q8NHS9 363 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ARRDC2Q8TBH0 407 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 PPP4R1Q8TF05 950 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ZNF75CPQ92670 426 aaPredicted RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 ZBTB9Q96C00 473 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 BIRC7Q96CA5 298 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 CCDC97Q96F63 343 aaPredicted RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 TUBGCP5Q96RT8 1024 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 FEM1AQ9BSK4 669 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 CEP44Q9C0F1 390 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 STN1Q9H668 368 aaKnown RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 ZNF71Q9NQZ8 489 aaPredicted RBP8.31□□□□□ -1.08
CHD4-208ENST00000540960 CHRAC1Q9NRG0 131 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 TREX1Q9NSU2 369 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 NDFIP2Q9NV92 336 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 SMPD4Q9NXE4 827 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.31□□□□□ -1.08
CHD4-208ENST00000540960 ACOT9Q9Y305 439 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 HIVEP3Q5T1R4 2406 aa8.31□□□□□ -1.08
CHD4-208ENST00000540960 ESPL1Q14674 2120 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 MROH6A6NGR9 719 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CXorf49A8MYA2 514 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 GFRA2O00451 464 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 TRIM38O00635 465 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 DFNA5O60443 496 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 SNX3O60493 162 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 VAPBO95292 243 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 MT-CYBP00156 380 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 ASLP04424 464 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 STMN1P16949 149 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 TPH1P17752 444 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 TAC1P20366 129 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 SERPINB5P36952 375 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 ACVRL1P37023 503 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 MAGEA12P43365 314 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 RASSF2P50749 326 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 DUSP3P51452 185 aaPredicted RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 EPHB1P54762 984 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 MLLT10P55197 1068 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 WDR4P57081 412 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 RHOAP61586 193 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 SNRPD1P62314 119 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 POLR2LP62875 67 aaKnown RBP8.3□□□□□ -1.08
CHD4-208ENST00000540960 DSC2Q02487 901 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 ACVR1Q04771 509 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 CCDC15Q0P6D6 951 aa8.3□□□□□ -1.08
CHD4-208ENST00000540960 USP10Q14694 798 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms