RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 APOBEC3BQ9UH17 382 aaKnown RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 MED16Q9Y2X0 877 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 SLC30A1Q9Y6M5 507 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 U3KQA8 63 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CABIN1Q9Y6J0 2220 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ARHGEF17Q96PE2 2063 aaPredicted RBP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CXorf49A8MYA2 514 aaPredicted RBP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 TRIM38O00635 465 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 VEGFDO43915 354 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 OPA1O60313 960 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 PCDHGA12O60330 932 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 MAGEC1O60732 1142 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CBFA2T3O75081 653 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CER1O95813 267 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 S1PR4O95977 384 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 NUDT17P0C025 328 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 ZNF883P0CG24 379 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 HTR1BP28222 390 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 PRAMEP78395 509 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 MPP1Q00013 466 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CTBSQ01459 385 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 FRG1Q14331 258 aaKnown RBP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 PRRT3Q5FWE3 981 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 SPANXN3Q5MJ09 141 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CTSL3PQ5NE16 218 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 LDLRAP1Q5SW96 308 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 STPG1Q5TH74 334 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 ZNF549Q6P9A3 640 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 IL27RAQ6UWB1 636 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 PACS1Q6VY07 963 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 FAM83HQ6ZRV2 1179 aaPredicted RBP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 DET1Q7L5Y6 550 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CILP2Q8IUL8 1156 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CCNJLQ8IV13 435 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CNTN4Q8IWV2 1026 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 LILRA3Q8N6C8 439 aaPredicted RBP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 BAHD1Q8TBE0 780 aaPredicted RBP12.81□□□□□ -0.36
CCDC42-202ENST00000539522 LPGAT1Q92604 370 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CAMK1GQ96NX5 476 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 BIRC8Q96P09 236 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 RUFY1Q96T51 708 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 MCMBPQ9BTE3 642 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 EPB41L4BQ9H329 900 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 LRRC4CQ9HCJ2 640 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 TMEM9BQ9NQ34 198 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CATSPERZQ9NTU4 200 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 NINJ2Q9NZG7 142 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 SAMD15Q9P1V8 674 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 CRLS1Q9UJA2 301 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 PLAAQ9Y263 795 aa12.81□□□□□ -0.36
CCDC42-202ENST00000539522 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 A6NCN8 305 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 OR2AG2A6NM03 316 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 CASC3O15234 703 aaKnown RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 YY2O15391 372 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 GRID2O43424 1007 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 CDK14O94921 469 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 RASGRP1O95267 797 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 ASMTLO95671 621 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 TNFP01375 233 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 POLBP06746 335 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 ABHD2P08910 425 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 GSTA2P09210 222 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 MYF5P13349 255 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 KELP23276 732 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 PHBP35232 272 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 SLC1A2P43004 574 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 CCT8P50990 548 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 LIMK1P53667 647 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 TIAL1Q01085 375 aaKnown RBP eCLIP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 CTBP1Q13363 440 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 LONRF1Q17RB8 773 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 PLA2G4EQ3MJ16 856 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 AASDHQ4L235 1098 aaPredicted RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 BCL7AQ4VC05 210 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 HSP90AA5PQ58FG0 334 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 TEDDM1Q5T9Z0 273 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 NEPROQ6NW34 567 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 CRTC3Q6UUV7 619 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 C3orf62Q6ZUJ4 267 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 TAS2R42Q7RTR8 314 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 PIP4P1Q86T03 277 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 OXR1Q8N573 874 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 SKA1Q96BD8 255 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 ULK4Q96C45 1275 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 CERS2Q96G23 380 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 ZIM3Q96PE6 472 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 OR2M4Q96R27 311 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 COPS8Q99627 209 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 NAT9Q9BTE0 207 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 TMEM109Q9BVC6 243 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 ROPN1BQ9BZX4 212 aaPredicted RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 ROPN1Q9HAT0 212 aaPredicted RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 C20orf96Q9NUD7 363 aaPredicted RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 SPATS2LQ9NUQ6 558 aaKnown RBP12.8□□□□□ -0.36
CCDC42-202ENST00000539522 GALPQ9UBC7 116 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 PCDHGB2Q9Y5G2 931 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 PSAT1Q9Y617 370 aa12.8□□□□□ -0.36
CCDC42-202ENST00000539522 NFS1Q9Y697 457 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms