RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MARK4Q96L34 752 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 BTBD9Q96Q07 612 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 CDRT15Q96T59 188 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 GPR21Q99679 349 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 IER2Q9BTL4 223 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-210ENST00000538120 COPS7BQ9H9Q2 264 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-210ENST00000538120 TAS2R13Q9NYV9 303 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 ATXN10Q9UBB4 475 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 PSMD13Q9UNM6 376 aa10.64□□□□□ -0.71
CLIP1-210ENST00000538120 FNDC3AQ9Y2H6 1198 aaKnown RBP10.64□□□□□ -0.71
CLIP1-210ENST00000538120 SMIM31A0A1B0GVY4 71 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 LRRC14BA6NHZ5 514 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 UBXN8O00124 270 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 CFLARO15519 480 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 AP1G1O43747 822 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 TLL1O43897 1013 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PEX1O43933 1283 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 NIPSNAP2O75323 286 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 TSPAN12O95859 305 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 CLPTM1O96005 669 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 SRCP12931 536 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PKMP14618 531 aaKnown RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 ARSAP15289 507 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PRDX6P30041 224 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 DPP6P42658 865 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 CDKL1Q00532 357 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 BCL2L1Q07817 233 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 GALNT1Q10472 559 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 FUT11Q495W5 492 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 GALNT4Q8N4A0 578 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 MARVELD2Q8N4S9 558 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 DNAJC5GQ8N7S2 189 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 ZFP28Q8NHY6 868 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 KIAA1191Q96A73 305 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 DGCR14Q96DF8 476 aaKnown RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 C17orf80Q9BSJ5 609 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 RTKNQ9BST9 563 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 DERL2Q9GZP9 239 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 P2RY12Q9H244 342 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 SYTL2Q9HCH5 934 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 GTSE1Q9NYZ3 720 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 CDYLQ9Y232 598 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 AP4B1Q9Y6B7 739 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 A0A0J9YYE9 177 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 DENRO43583 198 aaKnown RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 TRBC1P01850 177 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 RHOP08100 348 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 TSPAN8P19075 237 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 CD9P21926 228 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PIK3R1P27986 724 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PCSK6P29122 969 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 HNF1BP35680 557 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 TTPAP49638 278 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 LBX1P52954 281 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 RPL26P61254 145 aaKnown RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 NTHL1P78549 312 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 MYLK3Q32MK0 819 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 DSELQ8IZU8 1212 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PTGR2Q8N8N7 351 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 SIDT2Q8NBJ9 832 aaKnown RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 FAM156AQ8NDB6 213 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 HERVK_113Q902F9 699 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 PRPF18Q99633 342 aaKnown RBP10.63□□□□□ -0.71
CLIP1-210ENST00000538120 GPR63Q9BZJ6 419 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 TLR9Q9NR96 1032 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 LMCD1Q9NZU5 365 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 ANKRD36A6QL64 1941 aa10.63□□□□□ -0.71
CLIP1-210ENST00000538120 LINC01553A4QN01 128 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 CDC7O00311 574 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 PPP6CO00743 305 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 SOCS5O75159 536 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 SIX3O95343 332 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-210ENST00000538120 EPCAMP16422 314 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 PTPN2P17706 415 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 EN2P19622 333 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-210ENST00000538120 TCN1P20061 433 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-210ENST00000538120 RPL5P46777 297 aaKnown RBP10.62□□□□□ -0.71
CLIP1-210ENST00000538120 ADARP55265 1226 aaKnown RBP10.62□□□□□ -0.71
CLIP1-210ENST00000538120 C1QTNF8P60827 252 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 HERVK_113P63132 956 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 CACNG1Q06432 222 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 CEACAM7Q14002 265 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 FLOT2Q14254 428 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 CYHR1Q6ZMK1 362 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 OR2AP1Q8NGE2 309 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 PIP4K2CQ8TBX8 421 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 GRIN3AQ8TCU5 1115 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 CD200R1Q8TD46 325 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 EXT2Q93063 718 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 DTNBP1Q96EV8 351 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 ERVK-6Q9BXR3 956 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 LINC00597Q9H2U6 94 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 EML4Q9HC35 981 aaKnown RBP10.62□□□□□ -0.71
CLIP1-210ENST00000538120 RIMS3Q9UJD0 308 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 PKP3Q9Y446 797 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 HCFC2Q9Y5Z7 792 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 CXorf51AA0A1B0GTR3 108 aa10.62□□□□□ -0.71
CLIP1-210ENST00000538120 GRM6O15303 877 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms