RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ETV5P41161 510 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 SLC19A1P41440 591 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 TMPRSS15P98073 1019 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PDE1BQ01064 536 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 SNX1Q13596 522 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 SEPT7Q16181 437 aaKnown RBP14.55□□□□□ -0.08
USP28-204ENST00000537642 TMEM220Q6QAJ8 160 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 ABRAXAS1Q6UWZ7 409 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 MICALCLQ6ZW33 695 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PRUNE1Q86TP1 453 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 RCBTB1Q8NDN9 531 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 OR10G6Q8NH81 332 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 KCNE4Q8WWG9 221 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 SH3KBP1Q96B97 665 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 DNAJC1Q96KC8 554 aaKnown RBP14.55□□□□□ -0.08
USP28-204ENST00000537642 CMKLR1Q99788 373 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 DPYSL5Q9BPU6 564 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 C19orf43Q9BQ61 176 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 TLR10Q9BXR5 811 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 STN1Q9H668 368 aaKnown RBP14.55□□□□□ -0.08
USP28-204ENST00000537642 ASB8Q9H765 288 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 GRPEL1Q9HAV7 217 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PIH1D1Q9NWS0 290 aaKnown RBP14.55□□□□□ -0.08
USP28-204ENST00000537642 ZNF624Q9P2J8 865 aaPredicted RBP14.55□□□□□ -0.08
USP28-204ENST00000537642 ZNF148Q9UQR1 794 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PPP2R2CQ9Y2T4 447 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PCDHGA7Q9Y5G6 932 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 OR2AG2A6NM03 316 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 AGAP14A8MT82 685 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 DUX1O43812 170 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 POP7O75817 140 aaKnown RBP14.54□□□□□ -0.08
USP28-204ENST00000537642 IFNB1P01574 187 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 THRAP10827 490 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 IDSP22304 550 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 MPSTP25325 297 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 SLC5A2P31639 672 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 AKT1P31749 480 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 HADHAP40939 763 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 EPHA4P54764 986 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 DRG2P55039 364 aaKnown RBP14.54□□□□□ -0.08
USP28-204ENST00000537642 DMPKQ09013 629 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 TRA2AQ13595 282 aaKnown RBP eCLIP14.54□□□□□ -0.08
USP28-204ENST00000537642 AGAP9Q5VTM2 703 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 TMEM71Q6P5X7 295 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 WASH2PQ6VEQ5 465 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 AMZ2Q86W34 360 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 JAMLQ86YT9 394 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 AVL9Q8NBF6 648 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 TRIM58Q8NG06 486 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 NAT14Q8WUY8 206 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 CCDC97Q96F63 343 aaPredicted RBP14.54□□□□□ -0.08
USP28-204ENST00000537642 AHCYL2Q96HN2 611 aaKnown RBP14.54□□□□□ -0.08
USP28-204ENST00000537642 TBC1D10AQ9BXI6 508 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 FAM96AQ9H5X1 160 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 PRORYQ9H606 182 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 ETNK1Q9HBU6 452 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 WASH6PQ9NQA3 447 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 WDR37Q9Y2I8 494 aa14.54□□□□□ -0.08
USP28-204ENST00000537642 DNMT3AQ9Y6K1 912 aaPredicted RBP14.54□□□□□ -0.08
USP28-204ENST00000537642 PRAMEF33A0A0G2JMD5 474 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 LILRA5A6NI73 299 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 OR52A4PA6NMU1 304 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 HGSO14964 777 aaPredicted RBP14.53□□□□□ -0.08
USP28-204ENST00000537642 NRDCO43847 1150 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 KCNJ13O60928 360 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 CCL4P13236 92 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 ETS1P14921 441 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 VCLP18206 1134 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 MSH3P20585 1137 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 POU6F1Q14863 301 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 CLCA4Q14CN2 919 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 LONRF2Q1L5Z9 754 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 FNBP1LQ5T0N5 605 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 WDR74Q6RFH5 385 aaPredicted RBP14.53□□□□□ -0.08
USP28-204ENST00000537642 FAM83HQ6ZRV2 1179 aaPredicted RBP14.53□□□□□ -0.08
USP28-204ENST00000537642 DET1Q7L5Y6 550 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 BEND7Q8N7W2 519 aaPredicted RBP14.53□□□□□ -0.08
USP28-204ENST00000537642 GLIS1Q8NBF1 620 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 SGF29Q96ES7 293 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.53□□□□□ -0.08
USP28-204ENST00000537642 DPH1Q9BZG8 443 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 UCK1Q9HA47 277 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 NLE1Q9NVX2 485 aaPredicted RBP14.53□□□□□ -0.08
USP28-204ENST00000537642 PDP2Q9P2J9 529 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 CRLS1Q9UJA2 301 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 PIKFYVEQ9Y2I7 2098 aa14.53□□□□□ -0.08
USP28-204ENST00000537642 CACNA1GO43497 2377 aa14.52□□□□□ -0.08
USP28-204ENST00000537642 LOC400499M0QZD8 3231 aa14.52□□□□□ -0.08
USP28-204ENST00000537642 H7C0S8 307 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 NVLO15381 856 aaKnown RBP14.52□□□□□ -0.09
USP28-204ENST00000537642 KLK10O43240 276 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 SGTAO43765 313 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 PRAMEF10O60809 474 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 SUN1O94901 812 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 VIPP01282 170 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 FGGP02679 453 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 ITGALP20701 1170 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 PBLDP30039 288 aaPredicted RBP14.52□□□□□ -0.09
USP28-204ENST00000537642 MC4RP32245 332 aa14.52□□□□□ -0.09
USP28-204ENST00000537642 FDFT1P37268 417 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms